View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_high_2 (Length: 806)

Name: NF0552_high_2
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_high_2
NF0552_high_2
[»] chr7 (5 HSPs)
chr7 (74-228)||(27658121-27658275)
chr7 (569-660)||(33602264-33602355)
chr7 (390-503)||(33602421-33602528)
chr7 (306-365)||(27656844-27656903)
chr7 (611-656)||(33602132-33602177)
[»] chr5 (5 HSPs)
chr5 (74-228)||(37605789-37605941)
chr5 (89-216)||(33360981-33361104)
chr5 (89-216)||(5742432-5742556)
chr5 (306-369)||(37606029-37606092)
chr5 (326-368)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (89-216)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (89-216)||(18085257-18085380)
chr6 (306-369)||(31559483-31559546)
[»] chr4 (1 HSPs)
chr4 (331-368)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 1e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 27658275 - 27658121
Alignment:
Q  74 gcagcagagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataa 173  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658275 gcagccgagacaggcggagtgaccgaaaatagcatgagagggtggcactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataa 27658176  T
Q  174 tttgttcttgcttataggaaatgagtgaatcagagagagggaaggaaaacgaaac 228  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27658175 tttgttcttgcttataggaaatgagtgaatcagagagagagaaggaaaacgaaac 27658121  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 569 - 660
Target Start/End: Complemental strand, 33602355 - 33602264
Alignment:
Q  569 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatttggaaaatcaacgtaacagagcaatttcgttttag 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33602355 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatctggaaaatcaacgtaacagagcaatttcgttttag 33602264  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 33602528 - 33602421
Alignment:
Q  390 aaaaacatatttaatcgtttaatatttcatttcactatttcgctatttgccagctcatacttctaaccgtttcttattcacttttgccgccatataacaa 489  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33602528 aaaaacatatttaatcgtttaatatttcatttcat------gctatttgccagctcatacttctaatcgtttcttattcacttttgccgccatataacaa 33602435  T
Q  490 accatatttcattt 503  Q
    ||||||||||||||    
T  33602434 accatatttcattt 33602421  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 27656903 - 27656844
Alignment:
Q  306 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 365  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27656903 tattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 656
Target Start/End: Complemental strand, 33602177 - 33602132
Alignment:
Q  611 ttgtagttttggatttggaaaatcaacgtaacagagcaatttcgtt 656  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  33602177 ttgtagttttggatctggaaaatcaacgtaacagagcaatttcgtt 33602132  T

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Target: chr5 (Bit Score: 100; Significance: 5e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 37605789 - 37605941
Alignment:
Q  74 gcagcagagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataa 173  Q
    ||||| |||| ||| |||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  37605789 gcagccgagataggtggagcgaccgaaaatagcatgag--ggtggcactgtacaaagatgaagaaggagtgacgagaacctatgagtgaatgaaagatga 37605886  T
Q  174 tttgttcttgcttataggaaatgagtgaatcagagagagggaaggaaaacgaaac 228  Q
    ||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  37605887 ttttttcttgctcataggaaatgagtgattcagaaagagggaaggaaaacgaaac 37605941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 33360981 - 33361104
Alignment:
Q  89 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 188  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  33360981 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 33361076  T
Q  189 aggaaatgagtgaatcagagagagggaa 216  Q
     |||||||| ||||||||| ||||||||    
T  33361077 gggaaatgactgaatcagaaagagggaa 33361104  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 5742556 - 5742432
Alignment:
Q  89 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 188  Q
    |||||||| | ||||||||||||||||||| |||| ||||||||||||   |||||| ||| | |||  |||||||||||||| ||| |||||| || ||    
T  5742556 ggagtgactggaaatagcatgagagggtggcactgcacaaagatgaag---gagtgatgagcaactactagtgaatgaaagatgattagttctttctcat 5742460  T
Q  189 aggaaatgagtgaatcagagagagggaa 216  Q
    ||||||| ||||||||||| ||||||||    
T  5742459 aggaaattagtgaatcagaaagagggaa 5742432  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 37606029 - 37606092
Alignment:
Q  306 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 369  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  37606029 tattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctg 37606092  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
Q  326 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 368  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

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Target: scaffold0856 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 1228 - 1351
Alignment:
Q  89 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 188  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  1228 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagatgatttgttcttgatcat 1323  T
Q  189 aggaaatgagtgaatcagagagagggaa 216  Q
     |||||||| ||||||||| ||||||||    
T  1324 gggaaatgactgaatcagaaagagggaa 1351  T

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Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 18085257 - 18085380
Alignment:
Q  89 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 188  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  18085257 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 18085352  T
Q  189 aggaaatgagtgaatcagagagagggaa 216  Q
     |||||||| ||||||||| ||||||||    
T  18085353 gggaaatgactgaatcagaaagagggaa 18085380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 306 - 369
Target Start/End: Complemental strand, 31559546 - 31559483
Alignment:
Q  306 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 369  Q
    |||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  31559546 tattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctg 31559483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
Q  331 tttttgtgtttgtatttttgtgtttacttatcattcct 368  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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