View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_27 (Length: 329)
Name: NF0552_high_27
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 29 - 318
Target Start/End: Complemental strand, 34676459 - 34676178
Alignment:
| Q |
29 |
aaattaatcacttcaaatggttactacatgtttaacccactttggtaattaaaataaaataggaaagttaatattcatatcattggcatttggcaacaaa |
128 |
Q |
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| T |
34676459 |
aaattaatcacttcaaatggttactacatgtttaacccactttggtaattaaaata-----ggaaagttaatattcatatcattggcatttggcaacaaa |
34676365 |
T |
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| Q |
129 |
gggaaagtaagtaattgtaaaactgtggtccacgaatatatataagaggtagcaaaattaaagtgnnnnnnnnnnnncaagataaggaatatatatagct |
228 |
Q |
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| T |
34676364 |
gggaaagtaag-aattgtaaaactgtggtccacgaatatatata--aggtagcaaaattaaagtgaaaaataaaaaacaagataaggaatatatatagct |
34676268 |
T |
|
| Q |
229 |
agggtaagtaagatatataggaagactaacccgtagagttaggctttagaatcaagaaattaattattaaacgatatatatatgcttcat |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676267 |
agggtaagtaagatatatgggaagactaacccgtagagttaggctttagaatcaagaaattaattattaaacgatatatatatgcttcat |
34676178 |
T |
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