View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_39 (Length: 280)
Name: NF0552_high_39
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 15160924 - 15160657
Alignment:
| Q |
1 |
gtttagtgatcttaatgtttaatgatcttaatgtcatgattattatgagttactttcatcatactatatgagtatagtatgatcagtatgtaagatttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15160924 |
gtttagtgatcttaatgtttaatgatcttaatgtcatgattattatgagttactttcatcatactatatgagtatagtatgatcagtatgcaagatttga |
15160825 |
T |
|
| Q |
101 |
ttgctaattctcactttcaattcatgtaggcaaaaactaacagccctgaatctgaggagatatgtattattcgcttattggtgtatcattttggagtcaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
15160824 |
ttgctaattctcattttcaattcatgtaggcaaaaactaacagccctgaatctgaggatatatgtattattcgcttactggtgtatca-cttggagtcaa |
15160726 |
T |
|
| Q |
201 |
atctacctgtgatgattttttcatatcctgttttcaaatgcatgggcatgcaaagtagccttcctctgt |
269 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15160725 |
atctacctctgatgattttttcatatcctgttttcaaatgcatgggcatgcaaagtagccttcctctgt |
15160657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 264
Target Start/End: Original strand, 15315606 - 15315741
Alignment:
| Q |
128 |
aggcaaaaactaacagccctgaatctgaggagatatgtattattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatc |
227 |
Q |
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|||| |||| ||| ||||||||| || |||| | ||||||| ||||| | ||| | |||||||| || ||||| ||||||||| |||||||||||||||| |
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| T |
15315606 |
aggcgaaaaataatagccctgaagctcaggataaatgtattgttcgcctgttgctatatcatttcggtgtcaa-tctacctgttatgattttttcatatc |
15315704 |
T |
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| Q |
228 |
ctgttttcaaatgcatgggcatgcaaagtagccttcc |
264 |
Q |
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| T |
15315705 |
ccgtcttcagatacatgggaatgcagagtagtcttcc |
15315741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 26465505 - 26465310
Alignment:
| Q |
67 |
tatgagtatagtatgatcagtatgtaagatttgattgctaattctcactttcaattcatgtaggcaaaaactaacagccctgaatctgaggagatatgta |
166 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
26465505 |
tatgagtatagtatgatcaatatgtaagattagattgctaattctcactttca-----tgtaggcaaaaactaacagccgtgaatctgaggagagatgta |
26465411 |
T |
|
| Q |
167 |
ttattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatcctgttttcaaatgcatgggcatgcaaagtagccttcctc |
266 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26465410 |
ttattcgcttattggtgtatcattttggagtc-aatctacctgtgatgattttttcatatcctgttttcaaatacatgggcatgcaaagtagccttcctc |
26465312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 14369937 - 14369731
Alignment:
| Q |
56 |
tcatcatactatatgagtatagtatgatcagtatgtaagatttgattgctaattctcactttcaattcatgtaggcaaaaactaacagccctgaatctga |
155 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||| | |
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| T |
14369937 |
tcattatactatatgagtatagtatgatcattatgtaagattttattgctaattctcactttca-----tgtagacaaaaattaacagccctgaatctaa |
14369843 |
T |
|
| Q |
156 |
ggagatatgtattattcgcttattggtgtatcattttggagtcaaatctacctgtgatgattttttcatatcctgttttcaaatgcatgggcatgcaaag |
255 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
14369842 |
ggagagatgtattattcgcttattggtgttacattttggagtcaa-tctacctgcgatgattttttcatatcctgttttcaaatacatgggcatgcatag |
14369744 |
T |
|
| Q |
256 |
tagccttcctctg |
268 |
Q |
| |
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||||||||||||| |
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| T |
14369743 |
tagccttcctctg |
14369731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 24846712 - 24846753
Alignment:
| Q |
56 |
tcatcatactatatgagtatagtatgatcagtatgtaagatt |
97 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24846712 |
tcatcaaactatatgagtatagtatgatcagtatgtaagatt |
24846753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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