View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_high_4 (Length: 676)

Name: NF0552_high_4
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_high_4
NF0552_high_4
[»] chr4 (24 HSPs)
chr4 (218-669)||(32280428-32280879)
chr4 (98-175)||(32280326-32280403)
chr4 (217-260)||(30666826-30666869)
chr4 (217-258)||(45891762-45891803)
chr4 (221-258)||(53133446-53133483)
chr4 (217-257)||(46963972-46964012)
chr4 (125-175)||(42169019-42169069)
chr4 (221-258)||(37056123-37056160)
chr4 (217-254)||(37861163-37861200)
chr4 (221-257)||(2554211-2554247)
chr4 (218-258)||(22409468-22409508)
chr4 (220-252)||(37861306-37861338)
chr4 (217-257)||(52355974-52356014)
chr4 (218-256)||(26533229-26533267)
chr4 (221-255)||(26711519-26711553)
chr4 (223-257)||(46362856-46362890)
chr4 (221-259)||(46393120-46393158)
chr4 (220-262)||(46963824-46963866)
chr4 (217-255)||(51164645-51164683)
chr4 (218-251)||(5050537-5050570)
chr4 (105-138)||(7209291-7209324)
chr4 (221-254)||(18371073-18371106)
chr4 (204-257)||(31217013-31217066)
chr4 (220-252)||(39414519-39414551)
[»] chr7 (18 HSPs)
chr7 (98-173)||(32958236-32958311)
chr7 (108-173)||(38319014-38319079)
chr7 (110-156)||(9997727-9997773)
chr7 (218-260)||(32958168-32958210)
chr7 (218-258)||(38318948-38318988)
chr7 (134-175)||(41894741-41894782)
chr7 (221-257)||(33645316-33645352)
chr7 (218-258)||(37391032-37391072)
chr7 (217-257)||(46603694-46603734)
chr7 (204-255)||(48046988-48047039)
chr7 (220-258)||(38073713-38073751)
chr7 (221-258)||(5989449-5989486)
chr7 (221-254)||(25781036-25781069)
chr7 (220-261)||(43131875-43131916)
chr7 (218-254)||(676211-676247)
chr7 (220-252)||(7907585-7907617)
chr7 (217-261)||(17354482-17354526)
chr7 (218-258)||(41888932-41888972)
[»] chr1 (21 HSPs)
chr1 (106-174)||(18908218-18908286)
chr1 (98-173)||(52413857-52413932)
chr1 (116-173)||(40372726-40372783)
chr1 (218-259)||(52413957-52413998)
chr1 (221-259)||(28773094-28773132)
chr1 (126-175)||(14499656-14499705)
chr1 (118-175)||(17499013-17499070)
chr1 (223-256)||(18919256-18919289)
chr1 (218-258)||(298195-298235)
chr1 (218-254)||(5327636-5327672)
chr1 (221-257)||(14499732-14499768)
chr1 (221-259)||(13771267-13771304)
chr1 (221-259)||(31820688-31820726)
chr1 (220-258)||(32441746-32441784)
chr1 (218-259)||(18908310-18908350)
chr1 (217-258)||(19234792-19234833)
chr1 (218-258)||(3491551-3491591)
chr1 (219-255)||(32544771-32544807)
chr1 (218-254)||(34462722-34462758)
chr1 (221-257)||(39275818-39275854)
chr1 (218-254)||(40372664-40372700)
[»] chr8 (16 HSPs)
chr8 (98-173)||(30734886-30734961)
chr8 (98-175)||(34702734-34702811)
chr8 (99-175)||(24560058-24560134)
chr8 (96-172)||(11336721-11336797)
chr8 (218-267)||(30069841-30069890)
chr8 (218-255)||(34702672-34702709)
chr8 (217-258)||(7042569-7042610)
chr8 (221-258)||(10361252-10361289)
chr8 (219-259)||(2539830-2539870)
chr8 (223-258)||(38666344-38666379)
chr8 (218-248)||(24560004-24560034)
chr8 (217-254)||(8059901-8059938)
chr8 (218-255)||(11257854-11257891)
chr8 (221-258)||(25186136-25186173)
chr8 (218-259)||(36068022-36068063)
chr8 (218-258)||(17867438-17867478)
[»] chr5 (15 HSPs)
chr5 (98-173)||(4982517-4982592)
chr5 (98-175)||(30116968-30117045)
chr5 (129-173)||(37148798-37148842)
chr5 (218-258)||(523624-523664)
chr5 (221-264)||(30873087-30873130)
chr5 (221-255)||(3557866-3557900)
chr5 (221-258)||(4982452-4982489)
chr5 (221-260)||(18334510-18334549)
chr5 (108-154)||(16055625-16055671)
chr5 (217-259)||(32632390-32632432)
chr5 (221-258)||(5402836-5402873)
chr5 (221-258)||(10020692-10020729)
chr5 (220-257)||(21369110-21369147)
chr5 (220-252)||(28735269-28735301)
chr5 (221-257)||(31559188-31559224)
[»] chr3 (29 HSPs)
chr3 (106-174)||(36226196-36226264)
chr3 (105-175)||(9644490-9644560)
chr3 (98-175)||(30686870-30686947)
chr3 (221-258)||(54362011-54362048)
chr3 (115-175)||(9653214-9653274)
chr3 (221-261)||(53287379-53287419)
chr3 (221-254)||(53683922-53683955)
chr3 (223-259)||(4127502-4127538)
chr3 (217-253)||(28389359-28389395)
chr3 (218-258)||(28451856-28451896)
chr3 (221-260)||(9644587-9644626)
chr3 (217-252)||(50129172-50129207)
chr3 (218-256)||(12568747-12568785)
chr3 (218-256)||(13545211-13545249)
chr3 (220-254)||(33967915-33967949)
chr3 (218-259)||(972406-972447)
chr3 (221-258)||(36226132-36226168)
chr3 (217-254)||(41242279-41242316)
chr3 (221-254)||(42791185-42791218)
chr3 (217-258)||(50170593-50170634)
chr3 (221-265)||(9653301-9653344)
chr3 (220-252)||(24355453-24355485)
chr3 (220-256)||(30578750-30578786)
chr3 (218-258)||(37662918-37662958)
chr3 (221-257)||(38672864-38672900)
chr3 (221-257)||(41519621-41519657)
chr3 (220-260)||(43782199-43782239)
chr3 (217-261)||(44243524-44243568)
chr3 (220-260)||(50164106-50164146)
[»] chr6 (7 HSPs)
chr6 (98-173)||(33756023-33756098)
chr6 (130-173)||(24822614-24822657)
chr6 (220-258)||(12622500-12622538)
chr6 (217-251)||(13656999-13657033)
chr6 (221-258)||(7509782-7509819)
chr6 (223-255)||(2588765-2588797)
chr6 (223-259)||(6383299-6383335)
[»] chr2 (23 HSPs)
chr2 (98-175)||(35367885-35367962)
chr2 (221-258)||(44966148-44966185)
chr2 (204-259)||(17696140-17696195)
chr2 (223-258)||(34929322-34929357)
chr2 (218-260)||(26009701-26009743)
chr2 (118-174)||(14284548-14284604)
chr2 (220-267)||(11617390-11617437)
chr2 (221-256)||(34504159-34504194)
chr2 (218-252)||(4762064-4762098)
chr2 (218-252)||(4860449-4860483)
chr2 (221-259)||(22892651-22892689)
chr2 (217-251)||(41542741-41542775)
chr2 (221-258)||(929006-929043)
chr2 (217-258)||(5577963-5578004)
chr2 (220-261)||(11941486-11941527)
chr2 (221-258)||(12972867-12972904)
chr2 (220-265)||(16550198-16550243)
chr2 (217-258)||(21620776-21620817)
chr2 (218-255)||(32656243-32656280)
chr2 (218-258)||(4860588-4860627)
chr2 (221-257)||(18734567-18734603)
chr2 (218-262)||(32227427-32227471)
chr2 (218-258)||(32644936-32644976)
[»] scaffold0154 (1 HSPs)
scaffold0154 (218-265)||(36471-36518)
[»] scaffold0014 (1 HSPs)
scaffold0014 (221-258)||(100158-100195)
[»] scaffold0192 (1 HSPs)
scaffold0192 (215-258)||(13357-13400)
[»] scaffold1157 (1 HSPs)
scaffold1157 (221-267)||(2007-2053)
[»] scaffold0027 (1 HSPs)
scaffold0027 (221-257)||(16788-16824)
[»] scaffold0008 (1 HSPs)
scaffold0008 (220-256)||(240561-240597)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 218 - 669
Target Start/End: Original strand, 32280428 - 32280879
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccctatatttaaacgttaattttaccaaacactcaatctcattagttcgtttatccaatatta 317  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  32280428 ttcttaacttatgtcttaagggcacaagttaacatttccctatatttaaacgttaattttaccaaacactcaatctcattagttaatttgtccaatatta 32280527  T
Q  318 actatcaactaactcatcagctatttgatatagatttattcgtcttatcggttattcggtctaattttaaaaggagaagagtttcaatttttcacattag 417  Q
    |||||||||||||||||||||||||||||||||||| ||  || ||||| | ||| || |||||||||||||| | ||||||||||||||||||||||||    
T  32280528 actatcaactaactcatcagctatttgatatagattcatcggttttatccgctatccgatctaattttaaaagaacaagagtttcaatttttcacattag 32280627  T
Q  418 tattccgtagccggcacaaaaattctcaatnnnnnnngaaggaatggatattaatatattccacggtagagtgtagtatattaattagcatttaactaat 517  Q
    ||||||||||||||||||||||||||||||       ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32280628 tattccgtagccggcacaaaaattctcaataaaaaaagaaagaatggatattaatatactccacggtagagtgtagtatattaattagcatttaactaat 32280727  T
Q  518 taagttaataagagagaggcagtgtaaaacgacagattaattaagttggttagtggaaccaggtagtggaacacaatttctcactccaacgcgaaatgtc 617  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32280728 taaatgaataagagagaggcagtgtaaaacgacagattaattaagttggttagtggaaccaggtagtggagcacaatttctcactccaacgcgaaatgtc 32280827  T
Q  618 tgtttttcgtcgtttactatatacaccaccactgtatcgttttttcatctca 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32280828 tgtttttcgtcgtttactatatacaccaccactgtatcgttttttcatctca 32280879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 32280326 - 32280403
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  32280326 ataaaaggaaataaacaactaattttgtattgaaagtataaatgtttaaacttttgtgatgttgaatgcataattttc 32280403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 30666869 - 30666826
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  30666869 tttcttaacttgtgcctcaagggcacaagttaacatttccctat 30666826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 45891803 - 45891762
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45891803 tttcttaacttgtgccttaagagcacaagttaacatttccct 45891762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 53133483 - 53133446
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53133483 ttaacttgtgccttaagggcacaagttaacatttccct 53133446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 46963972 - 46964012
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  46963972 tttctaaacttgtgccttaagggcacaagttaacatttccc 46964012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 42169069 - 42169019
Alignment:
Q  125 tattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||| ||||||||||  ||||||||||||| ||||||||||||||||||||    
T  42169069 tattaaaagtataaacatttaaacttttgtaatgttgaatacacaattttc 42169019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 37056160 - 37056123
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||||||||| |||||||||||||||||||||    
T  37056160 ttaacttgtgccttaaaggcacaagttaacatttccct 37056123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 37861200 - 37861163
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37861200 tttctaaacttgtgccttaagggcacaagttaacattt 37861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 2554211 - 2554247
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2554211 ttaacttgtgccttaagggcacaagttagcatttccc 2554247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 22409468 - 22409508
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  22409468 ttcttaacatgtgccctaagggcacaagttaacatttccct 22409508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 37861306 - 37861338
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacat 252  Q
    |||||||||||||||||||||||||||||||||    
T  37861306 cttaacttgtgccttaagggcacaagttaacat 37861338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 52355974 - 52356014
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  52355974 tttcttaacttatgcctcaagggcacaagttaacatttccc 52356014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 26533229 - 26533267
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcc 256  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  26533229 ttcttaacatgtgccataagggcacaagttaacatttcc 26533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 26711553 - 26711519
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttc 255  Q
    ||||||||||| |||||||||||||||||||||||    
T  26711553 ttaacttgtgctttaagggcacaagttaacatttc 26711519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 46362856 - 46362890
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||||||| |||||||||||||||||||||||||    
T  46362856 aacttgtgctttaagggcacaagttaacatttccc 46362890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 46393158 - 46393120
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  46393158 ttaacttatgccttaaggacacaagttaacatttcccta 46393120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 46963866 - 46963824
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctatat 262  Q
    ||||||||||||||||||| |||||||||||||  ||||||||    
T  46963866 cttaacttgtgccttaaggccacaagttaacatgaccctatat 46963824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 51164645 - 51164683
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttc 255  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  51164645 tttcttaacttctgcctcaagggcacaagttaacatttc 51164683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 5050537 - 5050570
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaaca 251  Q
    ||||||||||||||| ||||||||||||||||||    
T  5050537 ttcttaacttgtgccataagggcacaagttaaca 5050570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 7209324 - 7209291
Alignment:
Q  105 gaaataaacaattaattttatattgaaagtataa 138  Q
    |||||||| |||||||||||||||||||||||||    
T  7209324 gaaataaaaaattaattttatattgaaagtataa 7209291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 18371106 - 18371073
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacattt 254  Q
    |||||||||| |||||||||||||||||||||||    
T  18371106 ttaacttgtgtcttaagggcacaagttaacattt 18371073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 31217013 - 31217066
Alignment:
Q  204 tttctatatgagctttcttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||||  | ||| |||||||||| ||||||||||||||||| ||||||||    
T  31217013 tttctatatttgatttattaacttgtgtcttaagggcacaagttagcatttccc 31217066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 39414519 - 39414551
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacat 252  Q
    ||||||||||||| |||||||||||||||||||    
T  39414519 cttaacttgtgccctaagggcacaagttaacat 39414551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 32958311 - 32958236
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32958311 ataaaaggaaataaataattaattttgtattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 32958236  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 38319079 - 38319014
Alignment:
Q  108 ataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  38319079 ataaacaattaattttgtattgaaagtataaatgtttaaacttttgtgatgttaaatgcacaattt 38319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 9997773 - 9997727
Alignment:
Q  110 aaacaattaattttatattgaaagtataaatgtttaaacttttgtga 156  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  9997773 aaacaattaactttgtattgaaagtataaatgtttaaacttttgtga 9997727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 32958210 - 32958168
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  32958210 ttcttaacttgtgccttaagggtacaagttaacatttccctat 32958168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 38318988 - 38318948
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  38318988 ttcttaacttgtgccttaaggacacaagttaacatttccct 38318948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 41894741 - 41894782
Alignment:
Q  134 tataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  41894741 tataaatgattaaacatttgtgatgttgaatacacaattttc 41894782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 33645316 - 33645352
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33645316 ttaacttgtgccttaagggcacaagttagcatttccc 33645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 37391072 - 37391032
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  37391072 ttcttaacatgtgccttaagggcacaagttaacttttccct 37391032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 46603734 - 46603694
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  46603734 tttcttaacttttgccttaagggcacaagttagcatttccc 46603694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 48046988 - 48047039
Alignment:
Q  204 tttctatatgagctttcttaacttgtgccttaagggcacaagttaacatttc 255  Q
    |||||||||  | ||| |||||||||||||||||||||||||||| ||||||    
T  48046988 tttctatatttgatttattaacttgtgccttaagggcacaagttagcatttc 48047039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 38073713 - 38073751
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  38073713 cttaacatgtgccctaagggcacaagttaacatttccct 38073751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 5989449 - 5989486
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  5989449 ttaacttgtgtcttaagggcataagttaacatttccct 5989486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 25781069 - 25781036
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacattt 254  Q
    ||||||||||||||||||||||||||||| ||||    
T  25781069 ttaacttgtgccttaagggcacaagttaatattt 25781036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 43131916 - 43131875
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctata 261  Q
    ||||||||||||| |||||||||||||||||||  |||||||    
T  43131916 cttaacttgtgccctaagggcacaagttaacatgaccctata 43131875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 676247 - 676211
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    |||| |||||||||||| |||||||||||||||||||    
T  676247 ttctaaacttgtgccttgagggcacaagttaacattt 676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 7907585 - 7907617
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacat 252  Q
    |||||| ||||||||||||||||||||||||||    
T  7907585 cttaacatgtgccttaagggcacaagttaacat 7907617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 17354482 - 17354526
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccctata 261  Q
    ||||||||| |||||| |||||||||||||||||| | |||||||    
T  17354482 tttcttaacatgtgccctaagggcacaagttaacactaccctata 17354526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 41888932 - 41888972
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||| | |||||| |||||||||||||||||||||||||    
T  41888932 ttcttatcatgtgccctaagggcacaagttaacatttccct 41888972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 18908218 - 18908286
Alignment:
Q  106 aaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaatttt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  18908218 aaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgaagttgaatacacattttt 18908286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 52413857 - 52413932
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  52413857 ataaaaggaaataaacaattaattttgtattgaaagtataaatgttcaaacttttgtgaagttgaatacacaattt 52413932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 40372783 - 40372726
Alignment:
Q  116 ttaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40372783 ttaattttatatagaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 40372726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 52413957 - 52413998
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52413957 ttcttaacttgtgccttaagggcacaagttaacatttcccta 52413998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 28773094 - 28773132
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  28773094 ttaacttgtgccttaagggcacaagttagcatttcccta 28773132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 14499656 - 14499705
Alignment:
Q  126 attgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    ||||||||||||||| |||||| |||||| || |||||||||||||||||    
T  14499656 attgaaagtataaatatttaaagttttgtaatattgaatacacaattttc 14499705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 17499070 - 17499013
Alignment:
Q  118 aattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||| |||||||||| |||||||||||| |||| | |||| |||||||||||||||    
T  17499070 aattttgtattgaaagtttaaatgtttaaagttttctaatgtagaatacacaattttc 17499013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 18919289 - 18919256
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttcc 256  Q
    ||||||||||||||||||||||||||||||||||    
T  18919289 aacttgtgccttaagggcacaagttaacatttcc 18919256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 298235 - 298195
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  298235 ttcttaacatgtgccctaagggcacaagttaacatttccct 298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 5327672 - 5327636
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    |||| ||||||||||||||||||||||||||||||||    
T  5327672 ttctaaacttgtgccttaagggcacaagttaacattt 5327636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 14499732 - 14499768
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14499732 ttaacttgtgcgttaagggcacaagttaacatttccc 14499768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 13771267 - 13771304
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13771267 ttaacttgtgccttaagg-cacaagttaacatttcccta 13771304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 31820688 - 31820726
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  31820688 ttaacttgcgccttaagggcacaagttaacattttccta 31820726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 32441746 - 32441784
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  32441746 cttaacatgtgccataagggcacaagttaacatttccct 32441784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 18908310 - 18908350
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  18908310 ttcttaacttg-gccttaagggcacaagttaacattttccta 18908350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 19234833 - 19234792
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||| ||||  ||||||||||||||||||||||||    
T  19234833 tttcttaacttatgccgcaagggcacaagttaacatttccct 19234792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 3491551 - 3491591
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| | |||| |||||||||||||||||||||||||    
T  3491551 ttcttaacatttgccctaagggcacaagttaacatttccct 3491591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 32544807 - 32544771
Alignment:
Q  219 tcttaacttgtgccttaagggcacaagttaacatttc 255  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  32544807 tcttaacatgtgccctaagggcacaagttaacatttc 32544771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 34462758 - 34462722
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    |||| |||||||| |||||||||||||||||||||||    
T  34462758 ttctaaacttgtgtcttaagggcacaagttaacattt 34462722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 39275854 - 39275818
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  39275854 ttaacttgtgctttaagcgcacaagttaacatttccc 39275818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 40372700 - 40372664
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  40372700 ttcttaatttgtaccttaagggcacaagttaacattt 40372664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 30734886 - 30734961
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30734886 ataaaaggaaataaacaattaattatgtattgaaagtataaatgtttaaacttttgtgaagttgaatacacaattt 30734961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 34702811 - 34702734
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  34702811 ataaaaggaaataaacaattaattttgtattaaaaatataaatgtttaaacttttgtgatgttgaatacaaaattttc 34702734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 24560134 - 24560058
Alignment:
Q  99 taaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    ||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24560134 taaaaggaaataagcaataaattttgtattgaaagtataaatgtttaaacttttgtaatgttgaatacacaattttc 24560058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 11336721 - 11336797
Alignment:
Q  96 caataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaatt 172  Q
    ||||||||  |||||| |||| |||||| |||  |||||||||||| ||||||||||||||||||||||||||||||    
T  11336721 caataaaagaaaataagcaataaattttgtatcaaaagtataaatgattaaacttttgtgatgttgaatacacaatt 11336797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 30069841 - 30069890
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccctatatttaaa 267  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  30069841 ttcttaacatgtgccttaagggcacaagttaacatttccctttatttaaa 30069890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 34702709 - 34702672
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttc 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34702709 ttcttaacttgtgccttaagggcacaagttaacatttc 34702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 7042610 - 7042569
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  7042610 tttctaaacttgtgccttgagggcacaagttaacatttccct 7042569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 10361252 - 10361289
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10361252 ttaacttgtgccttgagggcacaagttaacatttccct 10361289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 2539870 - 2539830
Alignment:
Q  219 tcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  2539870 tcttaacatgtgccataagggcacaagttaacatttcccta 2539830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 38666379 - 38666344
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||||||||| |||||||||||||||||||    
T  38666379 aacttgtgccttaaggacacaagttaacatttccct 38666344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 24560034 - 24560004
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagtta 248  Q
    |||||||||||||||||||||||||||||||    
T  24560034 ttcttaacttgtgccttaagggcacaagtta 24560004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 8059938 - 8059901
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  8059938 tttcttaacttatgcctcaagggcacaagttaacattt 8059901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 11257891 - 11257854
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttc 255  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  11257891 ttcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 25186173 - 25186136
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  25186173 ttaacttgtaccttaagggcacaagttaatatttccct 25186136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 36068063 - 36068022
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||| |||| | ||||||||||||||||||||||||||    
T  36068063 ttcttaacatgtgtcataagggcacaagttaacatttcccta 36068022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 17867478 - 17867438
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| |||||||||||| ||||| |||||||||||||    
T  17867478 ttcttaacatgtgccttaaggacacaaattaacatttccct 17867438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 4982592 - 4982517
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  4982592 ataaaaggaagtaaacaattaattttgtattgaaagtataaatgtttaaacttttatgatgttgaatgcacaattt 4982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 30117045 - 30116968
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||| ||||||| |||| ||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||    
T  30117045 ataaaaagaaataagcaataaattttatatttaaattataaatgtttaaacttttgtagtgttgaatacacaattttc 30116968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 37148798 - 37148842
Alignment:
Q  129 gaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  37148798 gaaagtataaatgtttaaacttttgtgatgttgaatgcacaattt 37148842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 523664 - 523624
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  523664 ttctaaacttgtgccttaagggcacaagttaacatttccct 523624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 30873087 - 30873130
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccctatattt 264  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  30873087 ttaacttgtgccttaagggcacaagttagcatttccctaaattt 30873130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 3557866 - 3557900
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttc 255  Q
    |||||||||||||||||||||||||||||||||||    
T  3557866 ttaacttgtgccttaagggcacaagttaacatttc 3557900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 4982489 - 4982452
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4982489 ttaacttgtgctttaagggcacaagttaacatttccct 4982452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 18334510 - 18334549
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  18334510 ttaacttgtgccctcagggcacaagttaacatttccctat 18334549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 16055625 - 16055671
Alignment:
Q  108 ataaacaattaattttatattgaaagtataaatgtttaaacttttgt 154  Q
    ||||||||| |||||| |||| |||||||||||||||||| ||||||    
T  16055625 ataaacaataaattttgtattaaaagtataaatgtttaaatttttgt 16055671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 32632432 - 32632390
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||    
T  32632432 tttcttaacatgtaccttaaaggcacaagttaacatttcccta 32632390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 5402836 - 5402873
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  5402836 ttaacatgtgccttaaggggacaagttaacatttccct 5402873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 10020729 - 10020692
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  10020729 ttaacttgtgtcttaagggcacaagtcaacatttccct 10020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 21369147 - 21369110
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||| || ||||||||||||||||||||||||||||    
T  21369147 cttaacatgcgccttaagggcacaagttaacatttccc 21369110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 28735301 - 28735269
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacat 252  Q
    ||||||||||||| |||||||||||||||||||    
T  28735301 cttaacttgtgccctaagggcacaagttaacat 28735269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 31559188 - 31559224
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  31559188 ttaacttgggccttgagggcacaagttaacatttccc 31559224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 36226264 - 36226196
Alignment:
Q  106 aaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaatttt 174  Q
    |||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  36226264 aaataaacaattaattttgtattgaaagtataaatatttatacttttatgatgttgaatacacaatttt 36226196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 9644490 - 9644560
Alignment:
Q  105 gaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||||||||  |||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  9644490 gaaataaacaagaaattttgtattgaaattataaatgtttaaactgttgtaatgttgaatacacaattttc 9644560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 30686947 - 30686870
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||| |||||||||||| ||||||||||| |||| ||||| || |||| |||| ||||||||||||||||||||||    
T  30686947 ataaaaggaaataaacaataaattttatattaaaagcataaaagtgtaaatttttatgatgttgaatacacaattttc 30686870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 54362048 - 54362011
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54362048 ttaacttgtgccttaagggcacaagttaacatttccct 54362011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 9653214 - 9653274
Alignment:
Q  115 attaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    ||||||||| |||||||| ||||||||| |||||| |||| |||||||||||||| |||||    
T  9653214 attaattttgtattgaaattataaatgtgtaaactgttgtaatgttgaatacacacttttc 9653274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 53287419 - 53287379
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccctata 261  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  53287419 ttaacttgtggcttaagggcacaagttaacatttccctata 53287379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 53683955 - 53683922
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacattt 254  Q
    ||||||||||||||||||||||||||||||||||    
T  53683955 ttaacttgtgccttaagggcacaagttaacattt 53683922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 4127502 - 4127538
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4127502 aacttgtgccctaagggcacaagttaacatttcccta 4127538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 28389395 - 28389359
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatt 253  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28389395 tttcttaacttgtgccttgagggcacaagttaacatt 28389359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 28451856 - 28451896
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  28451856 ttcttaacatgtgccctaagggcacaagttaacatttccct 28451896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 9644587 - 9644626
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  9644587 ttaactcgtgccttaagggcacaagttaacatttctctat 9644626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 50129172 - 50129207
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacat 252  Q
    |||||||||||||||| |||||||||||||||||||    
T  50129172 tttcttaacttgtgccctaagggcacaagttaacat 50129207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 12568747 - 12568785
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcc 256  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  12568747 ttcttaacatgtgccctaagggcacaagttaacatttcc 12568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 13545211 - 13545249
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcc 256  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  13545211 ttcttaacatgtgccctaagggcacaagttaacatttcc 13545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 33967949 - 33967915
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacattt 254  Q
    |||| ||||||||||||||||||||||||||||||    
T  33967949 cttatcttgtgccttaagggcacaagttaacattt 33967915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 972447 - 972406
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||| |||||| ||||| ||||||||||||||||||||    
T  972447 ttcttaacatgtgccctaaggacacaagttaacatttcccta 972406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 36226168 - 36226132
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||||||||||| |||||||||||||||||||    
T  36226168 ttaacttgtgccttaagg-cacaagttaacatttccct 36226132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 41242279 - 41242316
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacattt 254  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  41242279 tttcttaacttgtgccttgagggcataagttaacattt 41242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 42791185 - 42791218
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacattt 254  Q
    ||||||||||||||||||||| ||||||||||||    
T  42791185 ttaacttgtgccttaagggcaaaagttaacattt 42791218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 50170593 - 50170634
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||| ||||  ||||||||||||||||||||||||    
T  50170593 tttcttaacttatgccccaagggcacaagttaacatttccct 50170634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 9653301 - 9653344
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccctatattta 265  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||    
T  9653301 ttaactcgtgccttaagggca-aagttaacatttccctattttta 9653344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 24355485 - 24355453
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacat 252  Q
    |||||| ||||||||||||||||||||||||||    
T  24355485 cttaacatgtgccttaagggcacaagttaacat 24355453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 30578786 - 30578750
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttcc 256  Q
    |||||| |||||| |||||||||||||||||||||||    
T  30578786 cttaacatgtgccctaagggcacaagttaacatttcc 30578750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 37662958 - 37662918
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||| ||||  ||||||||||||||||||||||||    
T  37662958 ttcttaacttatgccccaagggcacaagttaacatttccct 37662918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 38672864 - 38672900
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  38672864 ttaacttgtgccttaaaggcacgagttaacatttccc 38672900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 41519621 - 41519657
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  41519621 ttaacttgtgccttgagggcacaagttagcatttccc 41519657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 43782199 - 43782239
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    |||||| |||||| |||||||||||||| ||||||||||||    
T  43782199 cttaacatgtgccataagggcacaagttgacatttccctat 43782239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 44243568 - 44243524
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccctata 261  Q
    ||||||||||||||  || ||| ||||||||||||||||||||||    
T  44243568 tttcttaacttgtgtttttaggacacaagttaacatttccctata 44243524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 50164106 - 50164146
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    |||| |||||||| ||||||||||||||||||||| |||||    
T  50164106 cttatcttgtgccctaagggcacaagttaacattttcctat 50164146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 33756023 - 33756098
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    |||||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33756023 ataaaaggaaataaataataaattttgtattgaaagtataaatgtttcaacttttgtaatgttgaatacacaattt 33756098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 24822614 - 24822657
Alignment:
Q  130 aaagtataaatgtttaaacttttgtgatgttgaatacacaattt 173  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  24822614 aaagtataaatatttaaacttttgtgatgttgaatgcacaattt 24822657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 12622538 - 12622500
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  12622538 cttaacttatgcctcaagggcacaagttaacatttccct 12622500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 13657033 - 13656999
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaaca 251  Q
    |||||||||||||||| ||||||||||||||||||    
T  13657033 tttcttaacttgtgccctaagggcacaagttaaca 13656999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 7509782 - 7509819
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  7509782 ttaacttgtgccttaagggcaaaagttagcatttccct 7509819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 2588797 - 2588765
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttc 255  Q
    |||||||| ||||||||||||||||||||||||    
T  2588797 aacttgtgtcttaagggcacaagttaacatttc 2588765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 6383335 - 6383299
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttcccta 259  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  6383335 aacttatgccttaagggcacaagttagcatttcccta 6383299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 35367962 - 35367885
Alignment:
Q  98 ataaaatgaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaattttc 175  Q
    |||||| ||||||| |||| |||||| |||||| || |||||||||||||||||| | ||||||||||||||||||||    
T  35367962 ataaaaagaaataagcaataaattttgtattgatagaataaatgtttaaacttttataatgttgaatacacaattttc 35367885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 44966148 - 44966185
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44966148 ttaacttgtgccttaagggcacaagttaacatttccct 44966185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 17696140 - 17696195
Alignment:
Q  204 tttctatatgagctttcttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||||| |  |||| ||||||| |||||||||||||||||||||||||||||    
T  17696140 tttctatatgtggcttctaaacttgtaccttaagggcacaagttaacatttcccta 17696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 34929322 - 34929357
Alignment:
Q  223 aacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  34929322 aacttgtgccttaagggcacaagttaacatttccct 34929357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 26009701 - 26009743
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccctat 260  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  26009701 ttctaaacttgtgccttaagggcacaagttagcatttccctat 26009743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 14284548 - 14284604
Alignment:
Q  118 aattttatattgaaagtataaatgtttaaacttttgtgatgttgaatacacaatttt 174  Q
    |||||| |||||||||||||||| ||| ||||||||| | ||||||||| |||||||    
T  14284548 aattttgtattgaaagtataaatatttgaacttttgtaacgttgaatactcaatttt 14284604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 11617390 - 11617437
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctatatttaaa 267  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||| ||||    
T  11617390 cttaacttgtgccttaagggcacaagttaccatatccttatatataaa 11617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 34504194 - 34504159
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttcc 256  Q
    |||||||||| |||||||||||||||||||||||||    
T  34504194 ttaacttgtgtcttaagggcacaagttaacatttcc 34504159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 4762098 - 4762064
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacat 252  Q
    ||||||||||||| |||||||||||||||||||||    
T  4762098 ttcttaacttgtgtcttaagggcacaagttaacat 4762064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 4860483 - 4860449
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacat 252  Q
    ||||||||||||||| |||||||||||||||||||    
T  4860483 ttcttaacttgtgccctaagggcacaagttaacat 4860449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 22892689 - 22892651
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttcccta 259  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  22892689 ttaacttgtgccttgagggaacaagttaacatttcccta 22892651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 41542775 - 41542741
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaaca 251  Q
    ||||||||| |||||||||||||||||||||||||    
T  41542775 tttcttaacatgtgccttaagggcacaagttaaca 41542741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 929043 - 929006
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  929043 ttaacttgtgtcttaaggacacaagttaacatttccct 929006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 5578004 - 5577963
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||| |||||||||||||||| ||||| |||||||||||||    
T  5578004 tttctaaacttgtgccttaaggacacaaattaacatttccct 5577963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 11941527 - 11941486
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctata 261  Q
    |||||| |||||| ||| ||||||||||||||||||||||||    
T  11941527 cttaacatgtgccctaaaggcacaagttaacatttccctata 11941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 12972867 - 12972904
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||||||||||||||||||||| | |||||||    
T  12972867 ttaacttgtgccttaagggcacaagttagcttttccct 12972904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 16550243 - 16550198
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttccctatattta 265  Q
    |||||| |||||| |||||||||||||||||||||| |||| ||||    
T  16550243 cttaacatgtgccctaagggcacaagttaacatttctctattttta 16550198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 21620776 - 21620817
Alignment:
Q  217 tttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||| ||||| || |||||||||||||||||||||    
T  21620776 tttcttaacttatgcctcaaaggcacaagttaacatttccct 21620817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 32656280 - 32656243
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttc 255  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  32656280 ttcttaacatgtgccctaagggcacaagttaacatttc 32656243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 4860588 - 4860627
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  4860588 ttcttaacttatgcct-aagggcacaagttaacatttccct 4860627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 18734567 - 18734603
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  18734567 ttaacttgtgtcttaatggcacaagttaacatttccc 18734603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 32227471 - 32227427
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccctatat 262  Q
    |||||||| | |||| |||||||||| ||||||||||||||||||    
T  32227471 ttcttaacatatgccctaagggcacatgttaacatttccctatat 32227427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 32644936 - 32644976
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  32644936 ttctaaacttgtgtcttaaaggcacaagttaacatttccct 32644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 36471 - 36518
Alignment:
Q  218 ttcttaacttgtgccttaagggcacaagttaacatttccctatattta 265  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  36471 ttcttaacatgtgctttaagggcacaagttaacatttccctttattta 36518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 100158 - 100195
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  100158 ttaacttgtgccttaagggcataagttaacatttccct 100195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 13400 - 13357
Alignment:
Q  215 gctttcttaacttgtgccttaagggcacaagttaacatttccct 258  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  13400 gctttcttaacttgtgccttgagaacacaagttaacatttccct 13357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 2007 - 2053
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccctatatttaaa 267  Q
    ||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  2007 ttaacatgtgccctaagggcacaagttaacatttcccaataattaaa 2053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 16824 - 16788
Alignment:
Q  221 ttaacttgtgccttaagggcacaagttaacatttccc 257  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16824 ttaacttgtgcattgagggcacaagttaacatttccc 16788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 240597 - 240561
Alignment:
Q  220 cttaacttgtgccttaagggcacaagttaacatttcc 256  Q
    |||||| |||||| |||||||||||||||||||||||    
T  240597 cttaacatgtgccctaagggcacaagttaacatttcc 240561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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