View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_41 (Length: 278)
Name: NF0552_high_41
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 32274642 - 32274467
Alignment:
| Q |
1 |
aacagatttttacttagggcctttaatttgtgactttcttattgtcactgtgataataaaacatattttt-tcccttctatcttagcatttcataatt-c |
98 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
32274642 |
aacagatttttacttagggcctttaatttgtgactatcttattgtcactgtgataataaaacagattttaatcccttctatcttagcatttcataatttc |
32274543 |
T |
|
| Q |
99 |
cactttattcttactctatttctgttcttgcattctgcatctgaatcgttgatcattttaatatgttatcatatga |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32274542 |
cactttattcttactctatttctgttcttgcattctgcatctgaatcgttgatcattttaatatgttatcatatga |
32274467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 32274483 - 32274409
Alignment:
| Q |
196 |
aatatgttatcatatgatgttatgttatattcaacctggttggaatcaatctgtggtatgtgatatattttgttg |
270 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32274483 |
aatatgttatcatatgatgttatgttatactcaacctggttggaatcaatttgtggtatgtgatatatttcgttg |
32274409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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