View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_42 (Length: 277)
Name: NF0552_high_42
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 52168793 - 52169054
Alignment:
| Q |
8 |
acataaaacccaactagcatgtcctgacatggtcccaactaaggcttttccctcagcatcatacatgtgaacattaccatcatctgaagctgaaaacagt |
107 |
Q |
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| T |
52168793 |
acataaaacccaactagcatgtcctgacatggtcccaactaaggcttttccctcagcatcatacatgtgaacattaccatcatctgaagctgaaaacagt |
52168892 |
T |
|
| Q |
108 |
agcctcggatcataaggagaataaacaagagaacgcacaggcatgaagtggccttcaaggtgatgcaaaaatttggctcgttgcacatcaaaaacagaaa |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52168893 |
agccttggatcataaggagaataaacaagagaacgcacaggcatgaagtggccttcaaggtgatgcaaaaatttggctcgttgcacatcaaaaacagaaa |
52168992 |
T |
|
| Q |
208 |
tggtgccatccattgagccacaagcaagtcgttttccatcagggctccatgcaacagctagg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52168993 |
tggtgccatccattgagccacaagcaagtcgttttccatcagggctccatgcaacagatagg |
52169054 |
T |
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