View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_44 (Length: 258)
Name: NF0552_high_44
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 256
Target Start/End: Original strand, 6855057 - 6855241
Alignment:
| Q |
72 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
171 |
Q |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
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| Q |
172 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
256 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
6855241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 6823207 - 6823024
Alignment:
| Q |
20 |
actcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacat |
119 |
Q |
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| T |
6823207 |
actcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaattcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacat |
6823110 |
T |
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| Q |
120 |
tcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcgaacagcaccaccagataaaacaccaccatatgca |
205 |
Q |
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| T |
6823109 |
tcttgactatctttttctcttcaaccaagaaagctcgaatgattctttctctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 24245823 - 24245690
Alignment:
| Q |
20 |
actcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacat |
119 |
Q |
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| T |
24245823 |
actcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaagcttgcttttcctttgtcttttggatcttcaagactt |
24245724 |
T |
|
| Q |
120 |
tcttgactatcttttgcttttcaaccaagaaagc |
153 |
Q |
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| T |
24245723 |
tcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 24245067 - 24244979
Alignment:
| Q |
164 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactc |
252 |
Q |
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||||||| ||||||||| ||||||||||| |||||||| ||| || ||| |||| ||| ||||||||||| | |||||||||||||| |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactc |
24244979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
83 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
153 |
Q |
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||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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