View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_48 (Length: 251)
Name: NF0552_high_48
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 11732893 - 11733131
Alignment:
| Q |
3 |
gatgaagagttggttctggtagattccaatgtaagatcaatgagggaaaccaaaactgaaaccgaaactactgcagaagcttcactaagtcctctcttga |
102 |
Q |
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| T |
11732893 |
gatgaagagttggttctggtagattccaatgtaagatcaatgagggaaaccaaaactgaaaccgaaactaccgtagaagcttcactaagtcctctcttga |
11732992 |
T |
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| Q |
103 |
atttgaagttcatggtaatcgagcgtattgaagaatctccaccacagaattggcttgaaggcttcacttcccttaaagaacttcacattcgagattgtcc |
202 |
Q |
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| T |
11732993 |
atttgaagttcatggtaatcgagcgtattgaagaatctccaccacagaattggcttgaaggcttcacttcccttaaagaacttcacattcgagattgtcc |
11733092 |
T |
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| Q |
203 |
taacttaaagtcattaccacaaggtttcaagactctctg |
241 |
Q |
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| T |
11733093 |
taacttaaagtcattaccacaaggtttcaagactctctg |
11733131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 12040103 - 12040198
Alignment:
| Q |
105 |
ttgaagttcatggtaatcgagcgtattgaagaatctccaccacagaattggcttgaaggcttcacttcccttaaagaacttcacattcgagattgt |
200 |
Q |
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| T |
12040103 |
ttgaagtccatggtaattgagcgtattgaccaatctccaccgaagagatggcttaaaaacttcatttcacttaaggaacttcacattcgagattgt |
12040198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 11829182 - 11829310
Alignment:
| Q |
105 |
ttgaagttcatggtaatcgagcgtattgaagaatctccaccacagaattggcttgaaggcttcacttcccttaaagaacttcacattcgagattgtccta |
204 |
Q |
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| T |
11829182 |
ttgaagtccatggtaattgagcgcattgaccaatctccaccagagagttggcttaaaaacttcatttcacttgaggaacttcacattagagattgtttta |
11829281 |
T |
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| Q |
205 |
acttaaagtcattaccacaaggtttcaag |
233 |
Q |
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|| |||| ||||||||||||||||| |
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| T |
11829282 |
ttttggagtctctaccacaaggtttcaag |
11829310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 11901201 - 11901082
Alignment:
| Q |
114 |
atggtaatcgagcgtattgaagaatctccaccacagaattggcttgaaggcttcacttcccttaaagaacttcacattcgagattgtcctaacttaaagt |
213 |
Q |
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| T |
11901201 |
atggtaattgagcgtattgagcaaactccaccagagaggtggcttaaaaactttgtttcgcttgaggaacttcacattagagattgtgttattttaaagt |
11901102 |
T |
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| Q |
214 |
cattaccacaaggtttcaag |
233 |
Q |
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| T |
11901101 |
ctttaccacaaggtttcaag |
11901082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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