View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_7 (Length: 555)
Name: NF0552_high_7
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 6 - 555
Target Start/End: Original strand, 5053585 - 5054134
Alignment:
| Q |
6 |
agcagcacagaaaaagcgctcatttcacttgtttgcatcacagaatttgaatcaatttctgaaaactatacaactactattgtcccttgacggtgacaaa |
105 |
Q |
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| T |
5053585 |
agcagcacagaaaaagcgctcatttcacttgttagcatcacagaatttgaatcaatttctgaaaactatacaactactattgtccctcgacggtggcaaa |
5053684 |
T |
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| Q |
106 |
actaatactaccaactatagattatatatagtggttctagttatgttgcaaacctttatattgcagaaaaatgcaggaataagatgtcaaaattgcggtt |
205 |
Q |
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| T |
5053685 |
actaatactaccaactatagattatatatagtggttctagttacgttgcaaacctttatattgcagaaaaatgcgggaataagatgtcaaaattgcggtt |
5053784 |
T |
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| Q |
206 |
gcaatactgttgtggagactttaaaatcccttatattacagtggcaatactgttgcggaggcttcaaaatcccttatattaccgtggcaatactgttgcg |
305 |
Q |
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| T |
5053785 |
gcaatactgttgtggagactttaaaatcccttatattacagtggcaatactgttgtggaggcttcaaaatcccttatattaccgtggcaatactgttgcg |
5053884 |
T |
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| Q |
306 |
gagacttcaaaatccttgatactgcagttgcaatagtggttactgatactattggagagacttcaaaatcttttatatcatcgcaattgcgcttgcagaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
5053885 |
gagacttcaaaatccttgatactgcagttgcaatagtggttactgatactattggagagacttcaaaatcttttatatggtggcaattgcgcttgcagaa |
5053984 |
T |
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| Q |
406 |
aacaattaaaccatgtctagtagaaatgaaaggaaagaaaagaaaacttggaagggccaccaacacaaaattttaacaatttatgctaaaagatggccaa |
505 |
Q |
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| T |
5053985 |
aacaattaaaccatgtctagtagaaatgaaaggaaagaaaagaaaacttggaagggccaccaacacaaaattttaacaatttatgctaaaagatggccaa |
5054084 |
T |
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| Q |
506 |
catgaaattttaacacatgtatgtatgcttagaacgaataatatggaaat |
555 |
Q |
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| T |
5054085 |
catgaaattttaacacatgtatgtatgcttagaaagaataatatggaaat |
5054134 |
T |
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