View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_1 (Length: 881)

Name: NF0552_low_1
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_1
NF0552_low_1
[»] chr8 (12 HSPs)
chr8 (614-861)||(1343264-1343511)
chr8 (614-861)||(1356076-1356323)
chr8 (135-316)||(1342768-1342949)
chr8 (518-589)||(1343163-1343234)
chr8 (518-589)||(1356353-1356424)
chr8 (621-780)||(1353150-1353291)
chr8 (671-767)||(11366585-11366681)
chr8 (665-861)||(1349764-1349957)
chr8 (656-767)||(1360413-1360524)
chr8 (384-418)||(1343029-1343063)
chr8 (134-170)||(25139905-25139941)
chr8 (385-418)||(1356524-1356557)
[»] chr3 (2 HSPs)
chr3 (788-861)||(24617857-24617930)
chr3 (133-170)||(36842202-36842239)
[»] chr7 (3 HSPs)
chr7 (694-767)||(13589841-13589914)
chr7 (706-767)||(29389381-29389442)
chr7 (134-170)||(40011753-40011789)
[»] chr2 (3 HSPs)
chr2 (651-759)||(43369386-43369494)
chr2 (682-767)||(43365227-43365312)
chr2 (134-170)||(14307712-14307748)
[»] chr5 (1 HSPs)
chr5 (137-168)||(36270788-36270819)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 614 - 861
Target Start/End: Original strand, 1343264 - 1343511
Alignment:
Q  614 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttc 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1343264 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttgtgtgtggcttcaaacctatgatggttc 1343363  T
Q  714 aatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 813  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343364 aatccaacaggtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 1343463  T
Q  814 tgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgat 861  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  1343464 tgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgat 1343511  T

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Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 614 - 861
Target Start/End: Complemental strand, 1356323 - 1356076
Alignment:
Q  614 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttc 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1356323 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttgtgtgtggcttcaaacctatgatggttc 1356224  T
Q  714 aatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 813  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356223 aatccaacatgtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattacttcctcaacaaggatcttccaagacttctccaata 1356124  T
Q  814 tgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgat 861  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  1356123 tgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgat 1356076  T

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Target: chr8; HSP #3
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 135 - 316
Target Start/End: Original strand, 1342768 - 1342949
Alignment:
Q  135 aggggtcgaggttcgaaccccgaacatcccacttatcccactagactaattgaccaaaaatatcttaactcttgggcataccctaattttacttttcttc 234  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  1342768 aggggtcgaggttcaaaccccgaacactacacttatcccactagactaattgaccaaaaatatcttaactcttgggcatacccttattttccttttcttc 1342867  T
Q  235 tcaagttactgaagtttcgcacgtaatcacgttttaagggcatcatatcacaattaaatagcaacgattacccaataagttt 316  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1342868 tcaagttactgaagcttcgcacgtaatcacgttttaagggcatcatatcacaattaaatagcaacgattacccattaagttt 1342949  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 518 - 589
Target Start/End: Original strand, 1343163 - 1343234
Alignment:
Q  518 ttctctgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 589  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343163 ttctttgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 1343234  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 518 - 589
Target Start/End: Complemental strand, 1356424 - 1356353
Alignment:
Q  518 ttctctgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 589  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356424 ttctttgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 1356353  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 621 - 780
Target Start/End: Original strand, 1353150 - 1353291
Alignment:
Q  621 tatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaa 720  Q
    ||||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||                | |||    
T  1353150 tatttttgttcattgagtcaaat--tgttcttctcagatgtcaaaaactgagatgatgaattcttgtgtgtggcttcaa----------------ttcaa 1353231  T
Q  721 caagtggaacaagagattgcaatgttttgtccttttatatgtcaagagttaatattactt 780  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  1353232 caagtggaacaagagattgcaatattttgcccttttatatgtcaagaattaatattactt 1353291  T

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Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 671 - 767
Target Start/End: Original strand, 11366585 - 11366681
Alignment:
Q  671 agatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 767  Q
    |||||||||| |||| ||||||||||||||| |  ||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  11366585 agatgatgaagccttatgtgtggcttcaaacttccgatgaatcaatccaacaagtggaacaagagattgcgatgttttgtccatttatatgtcaaga 11366681  T

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Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 665 - 861
Target Start/End: Original strand, 1349764 - 1349957
Alignment:
Q  665 aaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtca 764  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||| |||  ||||| ||||  ||    
T  1349764 aaactgagatgatgaattcttatgtgtggcttcaaacttgtgatggttcaatccaacaagtagatcaagagattgcaatgatttcccctttcatattaca 1349863  T
Q  765 agagttaatattacttcctcaacaaggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgat 861  Q
    |||   ||||||||       |   ||||||| ||||| ||||||||||||||||||||||||||| | ||||||| | || | || ||||||||||    
T  1349864 aga---aatattacaaaaaggaactggatcttgcaagagttctccaatatgtcttcctcaacaagtaagtccttcattgttgagctcaattcttgat 1349957  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 767
Target Start/End: Original strand, 1360413 - 1360524
Alignment:
Q  656 agatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttt 755  Q
    |||||||| ||||||||||| |||| |||| ||| |||||| |||| | ||| | ||||||||||  ||||||   ||||||||||||| |||| |||||    
T  1360413 agatgtcagaaactgagatggtgaagccttatgtatggcttaaaacttgtgacgattcaatccaagtagtggatagagagattgcaatggtttgcccttt 1360512  T
Q  756 tatatgtcaaga 767  Q
    ||||||||||||    
T  1360513 tatatgtcaaga 1360524  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 1343029 - 1343063
Alignment:
Q  384 ctagaactaattttattattcatttttaaaagatg 418  Q
    |||||||||||||||||||||||||||||||||||    
T  1343029 ctagaactaattttattattcatttttaaaagatg 1343063  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 25139941 - 25139905
Alignment:
Q  134 caggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25139941 caggggtcggggttcgaaccccgaacatcccacttat 25139905  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 1356557 - 1356524
Alignment:
Q  385 tagaactaattttattattcatttttaaaagatg 418  Q
    ||||||||||||||||||| ||||||||||||||    
T  1356557 tagaactaattttattatttatttttaaaagatg 1356524  T

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Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 788 - 861
Target Start/End: Original strand, 24617857 - 24617930
Alignment:
Q  788 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactccttcaatcttaaccttaattcttgat 861  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  24617857 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgat 24617930  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 36842202 - 36842239
Alignment:
Q  133 tcaggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  36842202 tcaggggtcggggttcgaaccccgtacatcccacttat 36842239  T

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Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 13589841 - 13589914
Alignment:
Q  694 cttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 767  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  13589841 cttcaaacttgtgatggttcaatccaacaagtggaacaagagattgcaatgttttgccctttcatatgtcaaga 13589914  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 706 - 767
Target Start/End: Complemental strand, 29389442 - 29389381
Alignment:
Q  706 gatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 767  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| ||||||||    
T  29389442 gatggttcaattcaacaggtggaacaagaaattgcaatgttttgccctcttatttgtcaaga 29389381  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 40011753 - 40011789
Alignment:
Q  134 caggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    |||||||||||||||||||||||||||||||||||||    
T  40011753 caggggtcgaggttcgaaccccgaacatcccacttat 40011789  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 651 - 759
Target Start/End: Complemental strand, 43369494 - 43369386
Alignment:
Q  651 ttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgt 750  Q
    |||| |||||||  ||||| ||||||||||  ||| ||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||     
T  43369494 ttctcagatgtcggaaactaagatgatgaagtcttatgtgtggcttcaaacttctgatggttcaattcaacaagtggaacaagatattgcaatgttttgc 43369395  T
Q  751 ccttttata 759  Q
    || ||||||    
T  43369394 ccatttata 43369386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 682 - 767
Target Start/End: Complemental strand, 43365312 - 43365227
Alignment:
Q  682 ccttttgtgtggcttcaaacctatgatggttcaatccaacaagtggaacaagagattgcaatgttttgtccttttatatgtcaaga 767  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||| ||||| |||||||||||||| || ||||||||| ||||    
T  43365312 ccttatgtgtggcttcaaacttctgatggttcaacccaacaagtggagcaagatattgcaatgttttgcccatttatatgtgaaga 43365227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 14307748 - 14307712
Alignment:
Q  134 caggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14307748 caggggtcgaggttcgaaccccgaacaccccacttat 14307712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 36270788 - 36270819
Alignment:
Q  137 gggtcgaggttcgaaccccgaacatcccactt 168  Q
    ||||||||||||||||||||||||||||||||    
T  36270788 gggtcgaggttcgaaccccgaacatcccactt 36270819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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