View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_11 (Length: 553)

Name: NF0552_low_11
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_11
NF0552_low_11
[»] chr3 (3 HSPs)
chr3 (199-474)||(31769532-31769807)
chr3 (1-190)||(31769357-31769546)
chr3 (476-543)||(31769870-31769937)
[»] scaffold0246 (1 HSPs)
scaffold0246 (226-453)||(22123-22351)
[»] chr4 (5 HSPs)
chr4 (226-453)||(40484184-40484412)
chr4 (226-309)||(9690589-9690672)
chr4 (383-426)||(19120126-19120169)
chr4 (380-435)||(41879085-41879140)
chr4 (383-435)||(42272978-42273030)
[»] chr6 (5 HSPs)
chr6 (226-435)||(31706771-31706981)
chr6 (478-543)||(27317266-27317331)
chr6 (478-543)||(27580865-27580933)
chr6 (253-303)||(32185855-32185905)
chr6 (383-427)||(14844185-14844229)
[»] chr5 (3 HSPs)
chr5 (226-432)||(42259323-42259529)
chr5 (226-337)||(40167258-40167369)
chr5 (383-427)||(476261-476305)
[»] scaffold0555 (1 HSPs)
scaffold0555 (380-427)||(7716-7763)
[»] chr2 (2 HSPs)
chr2 (380-415)||(18634962-18634997)
chr2 (380-426)||(11579585-11579631)
[»] chr1 (2 HSPs)
chr1 (380-426)||(28357940-28357986)
chr1 (383-427)||(3545149-3545193)
[»] chr8 (1 HSPs)
chr8 (383-415)||(42579494-42579526)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 199 - 474
Target Start/End: Original strand, 31769532 - 31769807
Alignment:
Q  199 atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatatt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||    
T  31769532 atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgtttctgtgcaggctaatattattgacaggcggtaatgggatccagatatt 31769631  T
Q  299 catgatggttacactgtgcgagacacttatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttc 398  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31769632 catgatggttacactgtgcgaggcacttatcagattctgacagctccgatttcctcaacaatagatgcaactagagaactagtttggcataagcagtttc 31769731  T
Q  399 ctatgaaggtgtccattgtagcttggcgtctgctgaagagaggttgccgaccagacgtaacctccataggcgcgac 474  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  31769732 ctatgaaggtgtccattgtagcttggcgtttgctgaagacaggttgccgaccagacgtaacctccataggcgcgac 31769807  T

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Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 31769357 - 31769546
Alignment:
Q  1 tcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaaatgttatattccaattggtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769357 tcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaaatgttatattccaattggtcc 31769456  T
Q  101 ttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatacacaattcaaat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769457 ttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatacacaattcaaat 31769546  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 476 - 543
Target Start/End: Original strand, 31769870 - 31769937
Alignment:
Q  476 tctgtttctccattgtgatgttttcgggtcgctatggcagcatattcggtcttggattggtgtctctg 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  31769870 tctgtttctccattgtgatgttttcgggtcgctatggcagcatatccggtcttggattggtgtgtctg 31769937  T

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Target: scaffold0246 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 226 - 453
Target Start/End: Complemental strand, 22351 - 22123
Alignment:
Q  226 gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact 325  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||   |     
T  22351 gtgtaggcaattacttgatggtgttattgtgcaggctaatattattgacaggtggcagtgggatccagatattcatgaaggttacactgtccgaggtgca 22252  T
Q  326 tatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttcctatgaaggtgtccattgtagcttggc 425  Q
    ||||||||||||||| ||   || || || ||||  || ||||| ||||| || || ||||||||||||| |||| | |||||||  ||||||||||| |    
T  22251 tatcagattctgacaactcaggtctcttccacaactgaagcaacaagagaccttgtatggcataagcaggctcctctcaaggtgtttattgtagcttgac 22152  T
Q  426 gtctgctg-aagagaggttgccgaccaga 453  Q
    |||||||| |||| ||||| |||||||||    
T  22151 gtctgctgaaagacaggttaccgaccaga 22123  T

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Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 226 - 453
Target Start/End: Complemental strand, 40484412 - 40484184
Alignment:
Q  226 gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact 325  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||   |     
T  40484412 gtgtaggcaattacttgatggtgttattgtgcaggctaatattattgacaggtggcagtgggatccagatattcatgaaggttacactgtccgaggtgca 40484313  T
Q  326 tatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttcctatgaaggtgtccattgtagcttggc 425  Q
    ||||||||||||||| ||   || || || ||||  || ||||| ||||| || || ||||||||||||| |||| | |||||||  ||||||||||| |    
T  40484312 tatcagattctgacaactcaggtctcttccacaactgaagcaacaagagaccttgtatggcataagcaggctcctctcaaggtgtttattgtagcttgac 40484213  T
Q  426 gtctgctg-aagagaggttgccgaccaga 453  Q
    |||||||| |||| ||||| |||||||||    
T  40484212 gtctgctgaaagacaggttaccgaccaga 40484184  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 9690672 - 9690589
Alignment:
Q  226 gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggtta 309  Q
    ||||||||  |||||||||  ||||  ||||||| ||||| ||  |||||||||||| |||||||| |||| ||||||||||||    
T  9690672 gtgtaggcttttacttgatactgtttgtgtgcagactaatgtttctgacaggtggcagtgagatccggatactcatgatggtta 9690589  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 19120169 - 19120126
Alignment:
Q  383 tggcataagcaggttcctatgaaggtgtccattgtagcttggcg 426  Q
    |||||||||||||||||||||||||| |||||| | ||||||||    
T  19120169 tggcataagcaggttcctatgaaggtttccatttttgcttggcg 19120126  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 41879085 - 41879140
Alignment:
Q  380 gtttggcataagcaggttcctatgaaggtgtccattgtagcttggcgtctgctgaa 435  Q
    ||||||||||||||||| ||| |||||||||| || || || ||||||||||||||    
T  41879085 gtttggcataagcaggtccctttgaaggtgtctatggtcgcgtggcgtctgctgaa 41879140  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 42273030 - 42272978
Alignment:
Q  383 tggcataagcaggttcctatgaaggtgtccattgtagcttggcgtctgctgaa 435  Q
    |||||||||||||||||  | |||||||| |||||||||||| || |||||||    
T  42273030 tggcataagcaggttcccctcaaggtgtctattgtagcttggagtttgctgaa 42272978  T

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Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 226 - 435
Target Start/End: Complemental strand, 31706981 - 31706771
Alignment:
Q  226 gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggt-ggcaatgagatccagatattcatgatggttacactgtgcgagacac 324  Q
    ||||| |||||||||||||| ||||  ||||||||||||||||||||||| || |||| || |||||||| || |||||||| |||| |||| |||   |    
T  31706981 gtgtatgcaattacttgatggtgttattgtgcaggctaatattattgacatgtgggcagtgggatccagacatgcatgatgggtacattgtgtgaggtgc 31706882  T
Q  325 ttatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttcctatgaaggtgtccattgtagcttgg 424  Q
     ||||||||||||||| |    || || |||||| | ||  |||| ||||| || || |||||||||||||||||| |||||||||||||||||||| ||    
T  31706881 ctatcagattctgacaacactggtctcttcaacagttgacacaacaagagaccttgtatggcataagcaggttcctctgaaggtgtccattgtagctcgg 31706782  T
Q  425 cgtctgctgaa 435  Q
    ||| |||||||    
T  31706781 cgtatgctgaa 31706771  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 478 - 543
Target Start/End: Complemental strand, 27317331 - 27317266
Alignment:
Q  478 tgtttctccattgtgatgttttcgggtcgctatggcagcatattcggtcttggattggtgtctctg 543  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  27317331 tgtttctccattgtgatgttttcgagtcgctatggcagcatatccggtcttggattggtgtgtctg 27317266  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 478 - 543
Target Start/End: Complemental strand, 27580933 - 27580865
Alignment:
Q  478 tgtttctccattgtgatgttttcgggtcgctatggcagcata---ttcggtcttggattggtgtctctg 543  Q
    ||||||||||||||||||||||| ||||| ||||||||||||   | ||||||||||||||||| ||||    
T  27580933 tgtttctccattgtgatgttttcaggtcgttatggcagcatatcctccggtcttggattggtgtgtctg 27580865  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 32185905 - 32185855
Alignment:
Q  253 tgtgcaggctaatattattgacaggtggcaatgagatccagatattcatga 303  Q
    |||||||||||||||| ||||||||||||| || |||||| | ||||||||    
T  32185905 tgtgcaggctaatattcttgacaggtggcagtgggatccaaacattcatga 32185855  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 14844185 - 14844229
Alignment:
Q  383 tggcataagcaggttcctatgaaggtgtccattgtagcttggcgt 427  Q
    |||||||||||||||||| ||||||| |||||| | |||||||||    
T  14844185 tggcataagcaggttcctttgaaggtttccattctggcttggcgt 14844229  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 432
Target Start/End: Complemental strand, 42259529 - 42259323
Alignment:
Q  226 gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact 325  Q
    |||||||| ||||||||||  |||   |||||||||||||||| ||||||||||||| ||  ||||||| || ||||| || || ||||||||||   ||    
T  42259529 gtgtaggctattacttgatagtgtatttgtgcaggctaatattcttgacaggtggcagtggcatccagacatacatgagggatatactgtgcgaggttct 42259430  T
Q  326 tatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttcctatgaaggtgtccattgtagcttggc 425  Q
    ||||| ||| ||||| || | || || || ||  | || |||| |||||| ||  |||||||||||||||||||| | ||||| | |||||| |||||||    
T  42259429 tatcacattatgacaactccggtctcttccacttttgacgcaattagagatctcatttggcataagcaggttcctctaaaggttttcattgttgcttggc 42259330  T
Q  426 gtctgct 432  Q
    |||||||    
T  42259329 gtctgct 42259323  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 40167258 - 40167369
Alignment:
Q  226 gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact 325  Q
    |||||||| |||| |||||| |||   |||||||||||||||| ||||||||||||  || |||||||| || |||||||| || || |||||||   ||    
T  40167258 gtgtaggctattatttgatggtgtatttgtgcaggctaatattcttgacaggtggctgtgggatccagacatacatgatgggtatacagtgcgaggtgct 40167357  T
Q  326 tatcagattctg 337  Q
    |||| |||||||    
T  40167358 tatcggattctg 40167369  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 476305 - 476261
Alignment:
Q  383 tggcataagcaggttcctatgaaggtgtccattgtagcttggcgt 427  Q
    |||||||||||||||||| ||||||| |||||| | |||||||||    
T  476305 tggcataagcaggttcctttgaaggtttccattttggcttggcgt 476261  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 7763 - 7716
Alignment:
Q  380 gtttggcataagcaggttcctatgaaggtgtccattgtagcttggcgt 427  Q
    ||||||||||||||||||||| ||||||| |||||| | |||||||||    
T  7763 gtttggcataagcaggttcctttgaaggtttccattatggcttggcgt 7716  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Complemental strand, 18634997 - 18634962
Alignment:
Q  380 gtttggcataagcaggttcctatgaaggtgtccatt 415  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18634997 gtttggcataagcaggttcctatgaaggtttccatt 18634962  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 11579585 - 11579631
Alignment:
Q  380 gtttggcataagcaggttcctatgaaggtgtccattgtagcttggcg 426  Q
    |||||||||||||| ||||| ||||||||||||||| | ||||||||    
T  11579585 gtttggcataagcatgttccaatgaaggtgtccattcttgcttggcg 11579631  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 28357986 - 28357940
Alignment:
Q  380 gtttggcataagcaggttcctatgaaggtgtccattgtagcttggcg 426  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||    
T  28357986 gtttggcataagcaggtccctttgaaggtttccattgttgcttggcg 28357940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 3545149 - 3545193
Alignment:
Q  383 tggcataagcaggttcctatgaaggtgtccattgtagcttggcgt 427  Q
    |||||||||||||||||| ||||||| |||||| | |||||||||    
T  3545149 tggcataagcaggttcctttgaaggtttccattctggcttggcgt 3545193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 42579494 - 42579526
Alignment:
Q  383 tggcataagcaggttcctatgaaggtgtccatt 415  Q
    ||||||||||||||||| |||||||||||||||    
T  42579494 tggcataagcaggttccaatgaaggtgtccatt 42579526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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