View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_12 (Length: 536)
Name: NF0552_low_12
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 508
Target Start/End: Complemental strand, 42662033 - 42661549
Alignment:
| Q |
12 |
agagacgcattggtgcaaattgtcaacgtgctactccaatgacaaaagttgctgatttgatggatagttacttagctgaagtagcacctgatgtcaactt |
111 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662033 |
agagacgcattgttggaaattgtcaacgtgctactccaatgacaaaagttgctgatttgatggatagttacttagctgaagtagcacctgatgtcaactt |
42661934 |
T |
|
| Q |
112 |
gaaatttccaaaatttcagtcacttgctgctgttattcctgattgtgctaggaccttggatgatggtatttaccgtgcaattgatatctacctcaaggtt |
211 |
Q |
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| T |
42661933 |
gaaatttccaaaatttcagtcacttgctgctgttattcctgattgtgctaggaccttggatgatggtatttaccgtgcaattgatatctacctcaaggtt |
42661834 |
T |
|
| Q |
212 |
gcctactttctctatatgcttaatagtaaatatgcttcaaataataagaggatcaaattaataatatttgtctcataagatttaaagagatttgtttttt |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661833 |
gcctactttctctatatgcttaatagtaaata--------------agaggatcaaattaataatatttgtctcataagatttaaagagatttgttttt- |
42661749 |
T |
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| Q |
312 |
catttagtacacatg---tttcattggtaatttttagacagacactaacggaaaattatgaatttcagagccatgcatggatgacagaatctgagaagga |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661748 |
catttagtacacatgatgtttcattggtaatttttagacagacactaacggaaaattatgaatttcagagccatgcatggatgacagaatctgagaagga |
42661649 |
T |
|
| Q |
409 |
acaaatctgcaggctgatgaattgccagaaactctcattggaagcaagcacacacgcagctcaaaacgaaaggctaccacttcgtgttgttgtccaagtt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661648 |
acaaatctgcaggctgatgaattgccagaaactctcattggaagcaagcacacacgcagctcaaaacgaaaggctaccacttcgtgttgttgtccaagtt |
42661549 |
T |
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