View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_13 (Length: 522)
Name: NF0552_low_13
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 270 - 508
Target Start/End: Original strand, 29373517 - 29373756
Alignment:
| Q |
270 |
ttagtattgttttaattatctctttgtcactctttggtaattgaggttctcacgttaacaactgagtttctattttcatgacaatttaacaaagtatgta |
369 |
Q |
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| T |
29373517 |
ttagtattgttttaattatctctttgtcactctttggtaattgaggttctaacattaacaactgagtttctattttcatgacaatttaacaaagtatgta |
29373616 |
T |
|
| Q |
370 |
gatagaacaaatagatagaacaatattttatgaattggaaatnnnnnnnnctaaaagatggatctgtacaaaaaatttggaagtaaatttattacttcta |
469 |
Q |
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| T |
29373617 |
gatagaacaaatagatagaacaatattttatgaattggaaataaaaaaaattaaaagatggatctgtacaaaaaatttggaagtaaatttattacttcta |
29373716 |
T |
|
| Q |
470 |
taata-nnnnnnnngaagaattgtatattaattggttgcc |
508 |
Q |
| |
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||||| |||||||||||||||||||||||||| |
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| T |
29373717 |
taatatttttttttgaagaattgtatattaattggttgcc |
29373756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 29373282 - 29373433
Alignment:
| Q |
34 |
tttcgttgcctcaccgttt--catgtcttgtgtcgggcttatgttaatatattatgctgattnnnnnnnnnnnnnngattgataaacacagttgtctcca |
131 |
Q |
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| T |
29373282 |
tttcgttgcctcaccgtttagcatgtcttgtgccgggcttgtgttaatatattatgctgattcaaaaaaaaatt---attgataaacacagttgtctcca |
29373378 |
T |
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| Q |
132 |
caaggatgatgattaattaaattcctcgtcaatcatgattttacttaggtgatag |
186 |
Q |
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| T |
29373379 |
caaggatgatgattagttaaattcctcgtcaatcatgattttacttgggtgatag |
29373433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 45086695 - 45086632
Alignment:
| Q |
123 |
ttgtctccacaaggatgatgattaattaaattcctcgtcaatcatgattttacttaggtgatag |
186 |
Q |
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||||||||||||| || ||||||||||||| |||| |||||||||||| ||||||||||||| |
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| T |
45086695 |
ttgtctccacaagaattgtgattaattaaataactcggcaatcatgatttaacttaggtgatag |
45086632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 23923348 - 23923289
Alignment:
| Q |
36 |
tcgttgcctcaccgttt--catgtcttgtgtcgggcttatgttaatatattatgctgatt |
93 |
Q |
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|||||||||| |||||| || ||||||||| |||||| ||||||||||||||| ||||| |
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| T |
23923348 |
tcgttgcctccccgtttagcacgtcttgtgtggggcttgtgttaatatattatgttgatt |
23923289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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