View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_16 (Length: 469)

Name: NF0552_low_16
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_16
NF0552_low_16
[»] chr5 (2 HSPs)
chr5 (1-463)||(30042095-30042557)
chr5 (176-384)||(14860982-14861191)
[»] chr8 (1 HSPs)
chr8 (100-276)||(16819343-16819518)
[»] chr1 (1 HSPs)
chr1 (169-373)||(15228683-15228892)
[»] chr7 (3 HSPs)
chr7 (66-373)||(21114454-21114761)
chr7 (177-310)||(31959304-31959437)
chr7 (199-255)||(31958479-31958535)
[»] chr6 (3 HSPs)
chr6 (169-243)||(25908195-25908269)
chr6 (157-261)||(12072350-12072454)
chr6 (186-306)||(12065662-12065782)
[»] chr4 (2 HSPs)
chr4 (66-143)||(12617478-12617556)
chr4 (189-309)||(30629737-30629857)


Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 30042095 - 30042557
Alignment:
Q  1 aagtaccacaaaataaatttctcaaaaaatcccaagaattgcgtcttcgactcacgtaaaggaatccataaaaacttgtaaatgccatcttccttgacta 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||    
T  30042095 aagtaccacaagataaatttctcaaaaaatcccaagaattgcgtcttcgactcccttataggaatccataaaaacttgtaaatgccatctcccttgacta 30042194  T
Q  101 ggatcatggacttcaacattaatataatttgcagaataatttatcactctacagttaaaagagtgtctccaaagtagtgctaagacaccacttcgaccat 200  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30042195 ggatcacggacttcaacattaatataattttcagaataatttatcactctacagttaaaagagtgtctccaaagtagtgctaagacaccacttcgaccat 30042294  T
Q  201 tactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaagtctcactgagaaaaagagcatccga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30042295 tactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaagtctcactgagaaaaagagcatccga 30042394  T
Q  301 cttataataggtactaggtattttaggttaagaactacactcaggttctctaggcctcggcaattccatcctacaagactcattcccctcaacaatattc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30042395 cttataataggtactaggtattttaggttaagaactacactcaggttctctaggcctcggcaattccatcctataagactcattcccctcaacaatattc 30042494  T
Q  401 aacaaagacatgacagtatcatcattaacggtatctgtagcgaaaactctctccctttgcttc 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30042495 aacaaagacatgacagtatcatcattaacggtatctgtagcgaaaactctctcctttttcttc 30042557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 14860982 - 14861191
Alignment:
Q  176 agtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaag 275  Q
    ||||||||| ||||||| | |||||||||| |||||  |||||  ||||||||| ||||||||||||  |||||||| |||||||| || |||| |||||    
T  14860982 agtgctaagccaccactccaaccattactactaacaactaaaccattatcaaaaccaagcaaataacaaaattcttctgttttattagcgtggactaaag 14861081  T
Q  276 tctcactgagaaaaagagcatccgacttataatag-gtactaggtattttaggttaagaactacactcaggttctctaggcctcggcaattccatcctac 374  Q
    ||||||| | ||| ||| ||||||||||| ||||| | |||||||||| ||| |||| |||||| || ||||||  ||||||||| || ||||||||||     
T  14861082 tctcacttaaaaatagaacatccgacttaaaatagcggactaggtattatagtttaaaaactacgcttaggttccttaggcctcgacagttccatcctat 14861181  T
Q  375 aagactcatt 384  Q
    ||||||||||    
T  14861182 aagactcatt 14861191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 276
Target Start/End: Complemental strand, 16819518 - 16819343
Alignment:
Q  100 aggatcatggacttcaacattaatataatttgcagaataatttatcactctacagttaaaagagtgtctccaaagtagtgctaagacaccacttcgacca 199  Q
    ||||||||| ||||| |||||||||| ||||||| | ||||||| |||  |||| ||||||||||  ||||||  ||| |||||| ||||| || ||| |    
T  16819518 aggatcatgaacttctacattaatatgatttgcata-taatttaacacaatacaattaaaagagttgctccaagatagcgctaagccaccatttagacga 16819420  T
Q  200 ttactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaagt 276  Q
      |||  |||  | ||||||  ||||||||||||||||| |||| |||||||||||||||||||  |||| ||||||    
T  16819419 agactgctaattgctaaacaactatcaaaatcaagcaaacaacgtaattcttcagttttattggagtggactaaagt 16819343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 373
Target Start/End: Complemental strand, 15228892 - 15228683
Alignment:
Q  169 ccaaagtagtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatgg 268  Q
    ||||| |||||||||| |||||||||||||||| ||| ||||||  ||||| ||||||||| ||||||||||||| ||  | || |||||||| |  |||    
T  15228892 ccaaaatagtgctaagccaccacttcgaccattgctactaacagaaaaacaattatcaaaaccaagcaaataacgaaaaacatctgttttatttgagtgg 15228793  T
Q  269 attaaagtctcactgagaaaaa----gagcatccgacttataatag-gtactaggtattttaggttaagaactacactcaggttctctaggcctcggcaa 363  Q
    | ||| ||||| ||||| || |    |  | ||||||||||||||| | |||||||||||||  ||  ||||||| ||||||||| |||  |||||| |     
T  15228792 actaatgtctcgctgaggaataaggcgtccgtccgacttataatagcgaactaggtattttaattttggaactacgctcaggttccctaaacctcggaag 15228693  T
Q  364 ttccatccta 373  Q
    ||||||||||    
T  15228692 ttccatccta 15228683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 373
Target Start/End: Complemental strand, 21114761 - 21114454
Alignment:
Q  66 ccataaaaacttgtaaat-gccatcttccttgactaggatcatggacttcaacattaatataatttgcagaataatttatcactctacagttaaaagagt 164  Q
    |||||||||| ||||||| |||||   ||| |||||||||||| ||||||||||||||||| ||| ||||||||||| | || | | || ||||||||      
T  21114761 ccataaaaacctgtaaattgccatggccctcgactaggatcattgacttcaacattaatatgattagcagaataattcaacaatttgcaattaaaagaac 21114662  T
Q  165 gtctccaaagtagtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggc 264  Q
     || | | | || ||||||| ||||||| ||||| |||||| |   ||  ||||| ||||||||  |||| | |||||| ||  | || |||||||| |     
T  21114661 ttcgctacaataatgctaagccaccactccgaccgttactact--tagcaaaacaattatcaaacccaagaatataacgaaaagcatctgttttattaga 21114564  T
Q  265 atggattaaagtctcactgagaaaaagagcatccgacttataatag-gtactaggtattttaggttaagaactacactcaggttctctaggcctcggcaa 363  Q
    | ||| || ||||||||||||||| |  || |||| |||||||||| | |||||||||||||  ||  ||||||| |||| |||| | || ||||||||     
T  21114563 agggactagagtctcactgagaaataaggcgtccggcttataatagcgaactaggtattttaattttggaactacgctcacgttccccagacctcggcag 21114464  T
Q  364 ttccatccta 373  Q
    ||||||||||    
T  21114463 ttccatccta 21114454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 310
Target Start/End: Original strand, 31959304 - 31959437
Alignment:
Q  177 gtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaagt 276  Q
    |||||||  ||||||| |||||||||||| |||    |||||| ||| ||||| |||||||||||||||||||||||||| |||||   |||||||  ||    
T  31959304 gtgctaaaccaccactccgaccattactactaatgcataaacaattaacaaaaccaagcaaataacggaattcttcagttctattgaagtggattagtgt 31959403  T
Q  277 ctcactgagaaaaagagcatccgacttataatag 310  Q
    |||||| ||||| |  ||||| | ||||||||||    
T  31959404 ctcacttagaaataaggcatctggcttataatag 31959437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 31958535 - 31958479
Alignment:
Q  199 attactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagt 255  Q
    |||||||  ||||| |||||| ||||||||  ||||||||||||| |||||||||||    
T  31958535 attactaccaacagataaacaattatcaaagccaagcaaataacgaaattcttcagt 31958479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 25908195 - 25908269
Alignment:
Q  169 ccaaagtagtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacg 243  Q
    ||||| |||||||||  |||||||||||||||||||| ||||||  ||||| ||||||||| ||||||| |||||    
T  25908195 ccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacg 25908269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 12072350 - 12072454
Alignment:
Q  157 aaaagagtgtctccaaagtagtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagtt 256  Q
    |||||||| ||  |||| |||||||||  |||||||||||||||||||| ||||||  ||||| || |||||  | ||||||||||| ||||| || |||    
T  12072350 aaaagagtttcgtcaaaatagtgctaaaccaccacttcgaccattactactaacagaaaaacaattgtcaaagccgagcaaataacgaaattcatctgtt 12072449  T
Q  257 ttatt 261  Q
    |||||    
T  12072450 ttatt 12072454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 12065662 - 12065782
Alignment:
Q  186 caccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaagtctcactgag 285  Q
    |||||||||||||||||||| ||||||  ||||| || |||||  | ||||||||||| ||||| || |||||||| |  |||| ||| |||||||  |     
T  12065662 caccacttcgaccattactactaacagaaaaacaattgtcaaagccgagcaaataacgaaattcatctgttttatttgagtggactaacgtctcacataa 12065761  T
Q  286 aaaaagagcatccgacttata 306  Q
     ||||| || |||||||||||    
T  12065762 gaaaagggcgtccgacttata 12065782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 12617478 - 12617556
Alignment:
Q  66 ccataaaaacttgtaaat-gccatcttccttgactaggatcatggacttcaacattaatataatttgcagaataattta 143  Q
    |||||| ||| ||||||| ||||| ||| | |||||||||||| |||||| ||||| |||| ||| |||||||||||||    
T  12617478 ccataagaacctgtaaattgccattttcttcgactaggatcattgacttcgacatttatatgattagcagaataattta 12617556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 30629737 - 30629857
Alignment:
Q  189 cacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacggaattcttcagttttattggcatggattaaagtctcactgagaaa 288  Q
    ||||||||||| ||| | | |||  |||||| ||||||||| ||| ||| ||||  |||||||| || || || | ||| ||||| ||||||||| |||     
T  30629737 cacttcgaccagtacaacttacaactaaacaattatcaaaaccaaacaagtaacaaaattcttcggtctttttagaatgtattaatgtctcactgggaat 30629836  T
Q  289 aagagcatccgacttataata 309  Q
     | ||||||||||||||||||    
T  30629837 taaagcatccgacttataata 30629857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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