View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_17 (Length: 457)
Name: NF0552_low_17
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 92 - 444
Target Start/End: Complemental strand, 40749858 - 40749506
Alignment:
| Q |
92 |
gcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcatttacactatgcagtagtactagatcattgt |
191 |
Q |
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| T |
40749858 |
gcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcatttacactatgcagtagtactagatcattgt |
40749759 |
T |
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| Q |
192 |
cttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaattgaaaagaaaaacagttttttcatccaca |
291 |
Q |
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| T |
40749758 |
cttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaattgaaaagaaaaacagttttttcatccaca |
40749659 |
T |
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| Q |
292 |
tcaaaaacaataaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatttgcatgactttggtctttgaaaccaaag |
391 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40749658 |
tcaaaaacaagaaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatttgcatgactttggtctttgaaaccaaag |
40749559 |
T |
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| Q |
392 |
tcacctaaattttttgatactnnnnnnnnnngtgaattgaattaccttgagaa |
444 |
Q |
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| T |
40749558 |
tcacctaaatttttttatactaaaaaaaaaagtgaattgaattaccttgagaa |
40749506 |
T |
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