View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0552_low_18 (Length: 452)
Name: NF0552_low_18
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 30 - 380
Target Start/End: Original strand, 5511351 - 5511701
Alignment:
| Q |
30 |
ggtgtgactagttcaaccggtaaatctaattaatatgcttaaaacattatactataaagaagtggtttaccctaaagtagaatttttatctttctatcaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5511351 |
ggtgtgactagttcaaccggtaaatctaattaatatgcttaaaacattatactataaaggagtggtttaccctaaagtagaatttttatctttctatcaa |
5511450 |
T |
|
| Q |
130 |
aagnnnnnnnnctgagaatttctatctatctactactattatacagcattgaagcaataatgtcaatttgtcaaaatgacccgtgggctataaactctgg |
229 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5511451 |
aagaaaaaaaactgagaatttctatctatctactactattatacagcattgaagcaataatgtcaatttgtcaaaatgacccgtgggctataaactctgg |
5511550 |
T |
|
| Q |
230 |
cattcatagtataattttgtcttcataaacaaatcaggtctaacatcatagttagctattgttggaatgttggtcagttttaataatggacaaaactaag |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5511551 |
cattcatagtataattttgtcttcataaaaaaatcaggtctaacatcatagttagctattgttggaatgttggtcagttttaataatggacaaaactaag |
5511650 |
T |
|
| Q |
330 |
gnnnnnnnngctgacagtaatggacaaacaaggttaggtaccccaactctg |
380 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5511651 |
gtttttgttgctgacagtaatggacaaacaaggttaggtaccccaactctg |
5511701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1381 times since January 2019
Visitors: 3669