View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_20 (Length: 430)
Name: NF0552_low_20
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_20 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 31769357 - 31769546
Alignment:
| Q |
1 |
tcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaaatgttatattccaattggtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769357 |
tcaccttcacattggacagcttctttttggtgctcatttcagggtcttgtcaccaataggggatccacttttgccaaaaatgttatattccaattggtcc |
31769456 |
T |
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| Q |
101 |
ttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatacacaattcaaat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769457 |
ttattggtgcatacaaaataaatcgtatcaatttgattttctgaaatcttaaatgtttgccaaatatagtcctatatacacaattcaaat |
31769546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 199 - 414
Target Start/End: Original strand, 31769532 - 31769747
Alignment:
| Q |
199 |
atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||| |
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| T |
31769532 |
atacacaattcaaatcttttttggagtgtgtaggcaattacttgatgatgtttctgtgcaggctaatattattgacaggcggtaatgggatccagatatt |
31769631 |
T |
|
| Q |
299 |
catgatggttacactgtgcgagacacttatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttc |
398 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31769632 |
catgatggttacactgtgcgaggcacttatcagattctgacagctccgatttcctcaacaatagatgcaactagagaactagtttggcataagcagtttc |
31769731 |
T |
|
| Q |
399 |
ctatgatgatgtccat |
414 |
Q |
| |
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|||||| | ||||||| |
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| T |
31769732 |
ctatgaaggtgtccat |
31769747 |
T |
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Target: scaffold0246 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 22351 - 22237
Alignment:
| Q |
226 |
gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact |
325 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||| | |
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| T |
22351 |
gtgtaggcaattacttgatggtgttattgtgcaggctaatattattgacaggtggcagtgggatccagatattcatgaaggttacactgtccgaggtgca |
22252 |
T |
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| Q |
326 |
tatcagattctgaca |
340 |
Q |
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||||||||||||||| |
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| T |
22251 |
tatcagattctgaca |
22237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 40484412 - 40484298
Alignment:
| Q |
226 |
gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact |
325 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||| | |
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| T |
40484412 |
gtgtaggcaattacttgatggtgttattgtgcaggctaatattattgacaggtggcagtgggatccagatattcatgaaggttacactgtccgaggtgca |
40484313 |
T |
|
| Q |
326 |
tatcagattctgaca |
340 |
Q |
| |
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||||||||||||||| |
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| T |
40484312 |
tatcagattctgaca |
40484298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 9690672 - 9690589
Alignment:
| Q |
226 |
gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggtta |
309 |
Q |
| |
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|||||||| ||||||||| |||| ||||||| ||||| || |||||||||||| |||||||| |||| |||||||||||| |
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| T |
9690672 |
gtgtaggcttttacttgatactgtttgtgtgcagactaatgtttctgacaggtggcagtgagatccggatactcatgatggtta |
9690589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 414
Target Start/End: Complemental strand, 31706981 - 31706792
Alignment:
| Q |
226 |
gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggt-ggcaatgagatccagatattcatgatggttacactgtgcgagacac |
324 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||||||||||||||| || |||| || |||||||| || |||||||| |||| |||| ||| | |
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| T |
31706981 |
gtgtatgcaattacttgatggtgttattgtgcaggctaatattattgacatgtgggcagtgggatccagacatgcatgatgggtacattgtgtgaggtgc |
31706882 |
T |
|
| Q |
325 |
ttatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttcctatgatgatgtccat |
414 |
Q |
| |
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||||||||||||||| | || || |||||| | || |||| ||||| || || |||||||||||||||||| ||| | ||||||| |
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| T |
31706881 |
ctatcagattctgacaacactggtctcttcaacagttgacacaacaagagaccttgtatggcataagcaggttcctctgaaggtgtccat |
31706792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 32185905 - 32185855
Alignment:
| Q |
253 |
tgtgcaggctaatattattgacaggtggcaatgagatccagatattcatga |
303 |
Q |
| |
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|||||||||||||||| ||||||||||||| || |||||| | |||||||| |
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| T |
32185905 |
tgtgcaggctaatattcttgacaggtggcagtgggatccaaacattcatga |
32185855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 400
Target Start/End: Complemental strand, 42259529 - 42259355
Alignment:
| Q |
226 |
gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact |
325 |
Q |
| |
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|||||||| |||||||||| ||| |||||||||||||||| ||||||||||||| || ||||||| || ||||| || || |||||||||| || |
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| T |
42259529 |
gtgtaggctattacttgatagtgtatttgtgcaggctaatattcttgacaggtggcagtggcatccagacatacatgagggatatactgtgcgaggttct |
42259430 |
T |
|
| Q |
326 |
tatcagattctgacagcttcagtttcctcaacaatagatgcaactagagaactagtttggcataagcaggttcct |
400 |
Q |
| |
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||||| ||| ||||| || | || || || || | || |||| |||||| || |||||||||||||||||||| |
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| T |
42259429 |
tatcacattatgacaactccggtctcttccacttttgacgcaattagagatctcatttggcataagcaggttcct |
42259355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 40167258 - 40167369
Alignment:
| Q |
226 |
gtgtaggcaattacttgatgatgttcctgtgcaggctaatattattgacaggtggcaatgagatccagatattcatgatggttacactgtgcgagacact |
325 |
Q |
| |
|
|||||||| |||| |||||| ||| |||||||||||||||| |||||||||||| || |||||||| || |||||||| || || ||||||| || |
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|
| T |
40167258 |
gtgtaggctattatttgatggtgtatttgtgcaggctaatattcttgacaggtggctgtgggatccagacatacatgatgggtatacagtgcgaggtgct |
40167357 |
T |
|
| Q |
326 |
tatcagattctg |
337 |
Q |
| |
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|||| ||||||| |
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|
| T |
40167358 |
tatcggattctg |
40167369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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