View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_21 (Length: 424)
Name: NF0552_low_21
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 414
Target Start/End: Original strand, 35522907 - 35523291
Alignment:
| Q |
30 |
caaggaatgtttagagcaaatggagggtgtggttatgtgaaaaagcctgtttttcttatggaaaaaggtccacacagtgagtgttttgatcctaaaagaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35522907 |
caaggaatgtttagagcaaatggagggtgtggttatgtgaaaaagcctgtttttcttatggagaaaggtccacacagtgagtgttttgatcctaaaagaa |
35523006 |
T |
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| Q |
130 |
cactgccagtgaagaagacattgaaggtgagatattattttggaaggaaatccatctatttgttgacatattttgaaattctctcatttctatctatagg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35523007 |
cactgccagtgaagaagacattgaaggtgagatattattttggaaggaaatccatctatttgttgacatattttgaaattctctcatttctatctatagg |
35523106 |
T |
|
| Q |
230 |
tgaaagtatatatgggaaatgggtggaactcagattttagcaaaacacactttgatacattctctcctccggacttttacacaaaggtgagtgctaatca |
329 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35523107 |
tgaaagtatacatgggaaatgggtggaactcagattttagcaaaacacactttgatacattctctcctccggacttttacacaaaggtgagtgctaatca |
35523206 |
T |
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| Q |
330 |
gctatgtagcaccgacacatgtgattaaattcattttcttaaattatgcctaatgttaatgttattgtcgtatctagtgtctgtg |
414 |
Q |
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| T |
35523207 |
gctatgtagcaccgacacatgtgattaaattcattttcttaaattatgcctaatgttaatgttattgtcgtatctagtgtttgtg |
35523291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 35509572 - 35509620
Alignment:
| Q |
30 |
caaggaatgtttagagcaaatggagggtgtggttatgtgaaaaagcctg |
78 |
Q |
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| T |
35509572 |
caaggaatgttcagagcaaatggaggatgtggttatgtaaaaaagcctg |
35509620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 35552871 - 35552911
Alignment:
| Q |
33 |
ggaatgtttagagcaaatggagggtgtggttatgtgaaaaa |
73 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| |
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| T |
35552871 |
ggaatgtttagagccaatggagggtgtggttatgttaaaaa |
35552911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 35509802 - 35509878
Alignment:
| Q |
241 |
atgggaaatgggtggaactcagattttagcaaaacacactttgatacattctctcctccggacttttacacaaaggt |
317 |
Q |
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|||||| |||| |||| || ||||||||| ||||||||||||| |||||||| || ||||||||||||||||| |
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| T |
35509802 |
atgggacatggttggagcttagattttagtcccacacactttgatatgttctctcccccagacttttacacaaaggt |
35509878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31653805 - 31653853
Alignment:
| Q |
30 |
caaggaatgtttagagcaaatggagggtgtggttatgtgaaaaagcctg |
78 |
Q |
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||||| ||||| | ||| |||||||||||||||||||||||||| |||| |
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|
| T |
31653805 |
caagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctg |
31653853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31703991 - 31704039
Alignment:
| Q |
30 |
caaggaatgtttagagcaaatggagggtgtggttatgtgaaaaagcctg |
78 |
Q |
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||||| ||||| | ||| |||||||||||||||||||||||||| |||| |
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| T |
31703991 |
caagggatgttcaaagcgaatggagggtgtggttatgtgaaaaaacctg |
31704039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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