View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_27 (Length: 362)
Name: NF0552_low_27
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 49 - 333
Target Start/End: Original strand, 473788 - 474064
Alignment:
| Q |
49 |
taaataaacgtgcaatcgtgtttggagagcataagaactttagtttacttcaacaaaaaataataataataaagcctaggattgcatatataaataaggt |
148 |
Q |
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| T |
473788 |
taaataaacgtgcaatcgtgtttggagagcataagaactttagtttacttcaacaaaaaataataataaaaaagcctaggattgtatatataaataaggt |
473887 |
T |
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| Q |
149 |
ttaccat--ctctttatattcacccnnnnnnnnnnnnnnnnnnnctttgagcaacgtgttttggaaagcaaagatgggatgtttagacatggagtattat |
246 |
Q |
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| T |
473888 |
ttaccatatctctttatattcacccaaaaaaaaa----------ctttgagcaacgtgttttggaaagcaaagatgggatgtttagacatggagtattat |
473977 |
T |
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| Q |
247 |
atgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgagt |
333 |
Q |
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| T |
473978 |
atgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgagt |
474064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 479411 - 479496
Alignment:
| Q |
206 |
tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggt |
291 |
Q |
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| T |
479411 |
tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggt |
479496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 466498 - 466598
Alignment:
| Q |
233 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
332 |
Q |
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| T |
466498 |
acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag |
466597 |
T |
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| Q |
333 |
t |
333 |
Q |
| |
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| |
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| T |
466598 |
t |
466598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 454762 - 454859
Alignment:
| Q |
205 |
ttttggaaagcaaagatgggat---gtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatct |
299 |
Q |
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| T |
454762 |
ttttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcaggcatgaatct |
454859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 27493931 - 27493874
Alignment:
| Q |
233 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcagg |
290 |
Q |
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| T |
27493931 |
acatggagtactacttaccaataatggttatgttattgatacagttaatatattcagg |
27493874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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