View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_28 (Length: 360)
Name: NF0552_low_28
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 4573712 - 4573876
Alignment:
| Q |
33 |
tgggatccgaattttcagcttttagagtgtgtaaaaggtcaaaacttgttctctatggctaatttaatgaaaccaaataaagtgatcgttagaaaaaggt |
132 |
Q |
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| T |
4573712 |
tgggatccgaattttcagcttttagagtgtgtaaaaggtcaaaacttgttctctatggctaatttaatgaaaccaaataaagtgatcgttag-aaaagat |
4573810 |
T |
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| Q |
133 |
attctctaagggttgatatcttttgtttgggattagtggcttggaaaacacgtgatagtgtgagag |
198 |
Q |
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| T |
4573811 |
attctctaagggttgatgtcttttgtgtgggattagtggcttggaaaacacgtgatagtgtgagag |
4573876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 228 - 351
Target Start/End: Original strand, 4573862 - 4573985
Alignment:
| Q |
228 |
gtgatagtgtgagagttttgtatgcaactttagtgtttttctttgttgtgtgttttagatactttttggctgtgccaaaactagatgccactttttcggt |
327 |
Q |
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| T |
4573862 |
gtgatagtgtgagagttttttatgcaactttagtgtttttctttgttgtgtgttttagatactttttggctgtgccaaaactagatgccactttttcggt |
4573961 |
T |
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| Q |
328 |
gcgacccaccactgtgccctatga |
351 |
Q |
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| T |
4573962 |
gcgacccaccactgtgccctatga |
4573985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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