View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_3 (Length: 722)
Name: NF0552_low_3
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 7 - 355
Target Start/End: Complemental strand, 33269649 - 33269297
Alignment:
| Q |
7 |
gcagcacagatacacaaataatgaccactgtcaagctaaaaagtgaagaaaatagctaatttgaactgcattagaaattgccttaccggtgtagtgtccc |
106 |
Q |
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| T |
33269649 |
gcagcacagatacacaaataatggccactgtcaagctaaaaagtgaagaaaatagctaatttgaactgtattagaaattgccttaccggtgtagtgtccc |
33269550 |
T |
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| Q |
107 |
cttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcatcgattacagtgg |
206 |
Q |
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| T |
33269549 |
cttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtaagaaccagttcttacttcatcgataacagtag |
33269450 |
T |
|
| Q |
207 |
gttccagatcaacaaataaggcccttggtacatgcttgcccgatccagtctcactgaagaaggtgttgaaagcatcgtgtgctacgccaggtgaggtatc |
306 |
Q |
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| T |
33269449 |
gttccagatcaacaaataaggcccttggtacatgcttgccagatccggtctcactgaagaaggtgttgaaagcatcgtgtgctacgccaggtgtggtatc |
33269350 |
T |
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| Q |
307 |
actgcaatgcaagcagatagagattaac----tttctgtgcttgatcaaccat |
355 |
Q |
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| T |
33269349 |
actgcaatgcaagtagatatagattaacaacatttctgtgcttaatcaaccat |
33269297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 509 - 719
Target Start/End: Complemental strand, 33269199 - 33268984
Alignment:
| Q |
509 |
acttgcttcagaaatagaattagaatatagataagcaagatgttaatccaaattgaagagatgttcctggttttccaatttggcaattctcaattgatct |
608 |
Q |
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| T |
33269199 |
acttgcttcaaaaatagaattagaatatagataagcaagaagtgaatccaaatcgaagagatgttcctagttttccattttggcaattctctattggtct |
33269100 |
T |
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| Q |
609 |
aagaagtgtgctaaccactcattacaagcaatatccttgaagaattgaatcccttggtct-----aaatatagctatcaaattgaaagttcactaagtaa |
703 |
Q |
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| T |
33269099 |
cagaagagtgctaaccactcattacaagcaataacattggagaattgaatcccttggtctacataacatatagctatctaaatgaaagttcactaagcaa |
33269000 |
T |
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| Q |
704 |
ttgttcgaccttttat |
719 |
Q |
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| T |
33268999 |
ttgatataccttttat |
33268984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 33269298 - 33269223
Alignment:
| Q |
434 |
atgagttaaaaaatccaaacatcaagaaaagcaacatagaaatcagtattatttgggcctaatcactaatcaacca |
509 |
Q |
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| T |
33269298 |
atgagttaaaaagtccaaacatcaagaaaagcaacatagaaatcagcattatttgtgcctaatcattaatcaacca |
33269223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 10033406 - 10033550
Alignment:
| Q |
95 |
gtgtagtgtccccttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcat |
194 |
Q |
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| T |
10033406 |
gtgtaatgtcctcttgcaaaattattagcagcatcttctttgccagtaattaactgttctggatgaaaaagttgtctataaggaccagatctaatttcat |
10033505 |
T |
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| Q |
195 |
cgattacagtgggttccagatcaacaaataaggcccttggtacat |
239 |
Q |
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| T |
10033506 |
caattacagtaggctctagatcaacaaatagagcccttggaacat |
10033550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 291
Target Start/End: Original strand, 35670341 - 35670537
Alignment:
| Q |
95 |
gtgtagtgtccccttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcat |
194 |
Q |
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||||||||||| || |||||||| |||||||| ||||| ||||| || || | ||| |||||||| || ||||||| ||| | ||| | | ||||||| |
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| T |
35670341 |
gtgtagtgtcctctagcaaaattgttagcggcgtcttctttgccggagatgagttgttcagggtggaagagttgtcggtaggtaccggaacgaacttcat |
35670440 |
T |
|
| Q |
195 |
cgattacagtgggttccagatcaacaaataaggcccttggtacatgcttgcccgatccagtctcactgaagaaggtgttgaaagcatcgtgtgctac |
291 |
Q |
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| T |
35670441 |
cgatgacggtgggttcaagatctacgaagacggcgcgaggaacgtgtttgccggaaccagtttcgctgaagaatgtgttgaatgcatcgtgtgctac |
35670537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 40378291 - 40378426
Alignment:
| Q |
149 |
tgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcatcgattacagtgggttccagatcaacaaataaggcccttggtacatgcttgcccg |
248 |
Q |
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|||||||| ||||| ||||| | ||| | ||||| || |||||||| || |||||||| || ||||| ||||| | || | || |||||||| || | |
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| T |
40378291 |
tgctcaggatgaaatagttggcggtatgtcccagtcctcacttcatcaatcacagtgggctcgagatctacaaaaactgcacgaggcacatgctttccag |
40378390 |
T |
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| Q |
249 |
atccagtctcactgaagaaggtgttgaaagcatcgt |
284 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
40378391 |
ctccagtttcactgaagaaggtgttgaaagcatcgt |
40378426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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