View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0552_low_30 (Length: 356)
Name: NF0552_low_30
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 110 - 296
Target Start/End: Original strand, 20376999 - 20377185
Alignment:
| Q |
110 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
20376999 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcatcacttccataaggctgaatggcaagccctgg |
20377098 |
T |
|
| Q |
210 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattctga |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20377099 |
tgtcggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattctga |
20377185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 110 - 293
Target Start/End: Original strand, 20369070 - 20369253
Alignment:
| Q |
110 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
20369070 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctgg |
20369169 |
T |
|
| Q |
210 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattc |
293 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20369170 |
agtcggtgtcaccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattc |
20369253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 110 - 293
Target Start/End: Original strand, 20389371 - 20389554
Alignment:
| Q |
110 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctgaatggcaagccccgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
20389371 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccacaaggctgaatagcaagccctgg |
20389470 |
T |
|
| Q |
210 |
tgttggtgttgccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattc |
293 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20389471 |
agtcggtgtcaccggagacaatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattc |
20389554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 20347674 - 20347759
Alignment:
| Q |
110 |
tcataccaatggaagccaaaatttgcaattttccagaaccacgaggacgtccccttccacgcttctcctcacttccataaggctga |
195 |
Q |
| |
|
|||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20347674 |
tcataccaatgggagccaaactctgcagttttccagaaccacgaggacgtccccttccacgcttctcctcacttccactaggctga |
20347759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1601 times since January 2019
Visitors: 3672