View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_38 (Length: 320)
Name: NF0552_low_38
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 5054400 - 5054120
Alignment:
| Q |
30 |
aaactctcacccgcgtgtgattcatatgctttctccaaaacaactagctgccaccaactctcacatttcatataagatattggtaattcacaacataggt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054400 |
aaactctcacccgcgtgtgattcatatgctttctccaaaacaactacctgccaccaactctcacatttcatataagatattggtaattcacaacataggt |
5054301 |
T |
|
| Q |
130 |
gtagagttataaaatccttctactgtttgtttttaattttgccattctttttcttaaattcatcgttcgtaggtaaaagcaattctgtttacttttagaa |
229 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054300 |
--agagttataaaattcatctactgtttgtttttaattttgccattctttttcttaaattcatcgttcgtaggtaaaagcaattctgtttacttttagaa |
5054203 |
T |
|
| Q |
230 |
catcttttgcctccagagacaaaaataatatcctatcctgttacttagtttctccttatttcattccaatttccatattattc |
312 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054202 |
catattttgcctccagagacaaaaataatatcctatcctgttacttagtttctccttatttcattccaatttccatattattc |
5054120 |
T |
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