View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_4 (Length: 716)

Name: NF0552_low_4
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_4
NF0552_low_4
[»] chr8 (9 HSPs)
chr8 (135-316)||(1342768-1342949)
chr8 (614-708)||(1343264-1343358)
chr8 (614-708)||(1356229-1356323)
chr8 (518-589)||(1343163-1343234)
chr8 (518-589)||(1356353-1356424)
chr8 (621-699)||(1353150-1353226)
chr8 (384-418)||(1343029-1343063)
chr8 (134-170)||(25139905-25139941)
chr8 (385-418)||(1356524-1356557)
[»] chr7 (1 HSPs)
chr7 (134-170)||(40011753-40011789)
[»] chr2 (1 HSPs)
chr2 (134-170)||(14307712-14307748)
[»] chr5 (1 HSPs)
chr5 (137-168)||(36270788-36270819)
[»] chr3 (1 HSPs)
chr3 (133-170)||(36842202-36842239)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 6e-79; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 135 - 316
Target Start/End: Original strand, 1342768 - 1342949
Alignment:
Q  135 aggggtcgaggttcgaaccccgaacatcccacttatcccactagactaattgaccaaaaatatcttaactcttgggcataccctaattttacttttcttc 234  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  1342768 aggggtcgaggttcaaaccccgaacactacacttatcccactagactaattgaccaaaaatatcttaactcttgggcatacccttattttccttttcttc 1342867  T
Q  235 tcaagttactgaagtttcgcacgtaatcacgttttaagggcatcatatcacaattaaatagcaacgattacccaataagttt 316  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1342868 tcaagttactgaagcttcgcacgtaatcacgttttaagggcatcatatcacaattaaatagcaacgattacccattaagttt 1342949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 614 - 708
Target Start/End: Original strand, 1343264 - 1343358
Alignment:
Q  614 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgat 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1343264 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttgtgtgtggcttcaaacctatgat 1343358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 614 - 708
Target Start/End: Complemental strand, 1356323 - 1356229
Alignment:
Q  614 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaaacctatgat 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1356323 tcccaaatatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttgtgtgtggcttcaaacctatgat 1356229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 518 - 589
Target Start/End: Original strand, 1343163 - 1343234
Alignment:
Q  518 ttctctgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 589  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343163 ttctttgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 1343234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 518 - 589
Target Start/End: Complemental strand, 1356424 - 1356353
Alignment:
Q  518 ttctctgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 589  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356424 ttctttgttttaggaaacaaatcttattcttaaaaattcaaacgatttttatcactataaatacaggtctaa 1356353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 621 - 699
Target Start/End: Original strand, 1353150 - 1353226
Alignment:
Q  621 tatttttgttcatcgagtcaaatattgttcttctgagatgtcaaaaactgagatgatgaatccttttgtgtggcttcaa 699  Q
    ||||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  1353150 tatttttgttcattgagtcaaat--tgttcttctcagatgtcaaaaactgagatgatgaattcttgtgtgtggcttcaa 1353226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 418
Target Start/End: Original strand, 1343029 - 1343063
Alignment:
Q  384 ctagaactaattttattattcatttttaaaagatg 418  Q
    |||||||||||||||||||||||||||||||||||    
T  1343029 ctagaactaattttattattcatttttaaaagatg 1343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 25139941 - 25139905
Alignment:
Q  134 caggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25139941 caggggtcggggttcgaaccccgaacatcccacttat 25139905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 1356557 - 1356524
Alignment:
Q  385 tagaactaattttattattcatttttaaaagatg 418  Q
    ||||||||||||||||||| ||||||||||||||    
T  1356557 tagaactaattttattatttatttttaaaagatg 1356524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 40011753 - 40011789
Alignment:
Q  134 caggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    |||||||||||||||||||||||||||||||||||||    
T  40011753 caggggtcgaggttcgaaccccgaacatcccacttat 40011789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 14307748 - 14307712
Alignment:
Q  134 caggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14307748 caggggtcgaggttcgaaccccgaacaccccacttat 14307712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 36270788 - 36270819
Alignment:
Q  137 gggtcgaggttcgaaccccgaacatcccactt 168  Q
    ||||||||||||||||||||||||||||||||    
T  36270788 gggtcgaggttcgaaccccgaacatcccactt 36270819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 36842202 - 36842239
Alignment:
Q  133 tcaggggtcgaggttcgaaccccgaacatcccacttat 170  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  36842202 tcaggggtcggggttcgaaccccgtacatcccacttat 36842239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 10 times since January 2019
Visitors: 3646