View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_54 (Length: 274)
Name: NF0552_low_54
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 35202358 - 35202532
Alignment:
| Q |
63 |
ataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtgg |
162 |
Q |
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| T |
35202358 |
ataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtgg |
35202457 |
T |
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| Q |
163 |
ttgcagaaaaaacaaacgtcttaaacgaccaaatcactcctcttcaaatattgatactgctactgcttctccttc |
237 |
Q |
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| T |
35202458 |
ttgcagaaaaaacaaacgtcttaaacgaccaaatcactcttcttcaaatattgatactgctactgcttctccttc |
35202532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 3945959 - 3945850
Alignment:
| Q |
68 |
aactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgca |
167 |
Q |
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| T |
3945959 |
aactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactcttagaaatgttcctgttggtggtggttaca |
3945860 |
T |
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| Q |
168 |
gaaaaaacaa |
177 |
Q |
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||| |||||| |
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| T |
3945859 |
gaagaaacaa |
3945850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 39741107 - 39741199
Alignment:
| Q |
86 |
ccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa |
178 |
Q |
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| T |
39741107 |
ccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaaggaatgttcctgttggaggtggatgcagaaaaaacaaa |
39741199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 34646022 - 34646131
Alignment:
| Q |
68 |
aactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgca |
167 |
Q |
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| T |
34646022 |
aactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaaacattcctgttggtggtggttcaa |
34646121 |
T |
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| Q |
168 |
gaaaaaacaa |
177 |
Q |
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|||||||||| |
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| T |
34646122 |
gaaaaaacaa |
34646131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 24878884 - 24878995
Alignment:
| Q |
65 |
aataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggtt |
164 |
Q |
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| T |
24878884 |
aataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaaatgttcctgttggtggtggct |
24878983 |
T |
|
| Q |
165 |
gcagaaaaaaca |
176 |
Q |
| |
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|||||||||||| |
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| T |
24878984 |
gcagaaaaaaca |
24878995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 13481061 - 13481126
Alignment:
| Q |
68 |
aactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtgga |
133 |
Q |
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|||||||| ||| ||||||||||||| ||||||||| | |||| |||||||||||||| ||||||| |
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| T |
13481061 |
aactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattggacaaaaggtgga |
13481126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 34976208 - 34976123
Alignment:
| Q |
93 |
acttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa |
178 |
Q |
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|||||||||| | |||| ||| |||||||| | ||| ||||||||||| ||| | ||||||||||| || || |||||||||||| |
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| T |
34976208 |
acttctgcaagacttgtagaaggtattggaccaaaggaggaacacttaggaacatccctgttggtggaggctgtagaaaaaacaaa |
34976123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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