View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0552_low_55 (Length: 269)
Name: NF0552_low_55
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_55 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 36314920 - 36315153
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
36314920 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtaaagttgttgaagcaaaaagtt |
36315019 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacacca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36315020 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagaacacca |
36315119 |
T |
|
| Q |
236 |
gagtaatctagtgataaaactgttgaatcttctt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36315120 |
gagtaatctagtgataaaactgttgaatcttctt |
36315153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 24)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 36 - 257
Target Start/End: Original strand, 19469769 - 19469993
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
||||||||||| |||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19469769 |
ccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
19469868 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattctattttgagcaca |
232 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
19469869 |
acccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatgattattggtaatttcctattttgagattctattttgagcaca |
19469968 |
T |
|
| Q |
233 |
ccagagtaatctagtgataaaactg |
257 |
Q |
| |
|
|||||||| |||||| ||||||||| |
|
|
| T |
19469969 |
ccagagtagtctagtaataaaactg |
19469993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 36 - 257
Target Start/End: Original strand, 19540693 - 19540917
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
||||||||||| |||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19540693 |
ccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
19540792 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattctattttgagcaca |
232 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
19540793 |
acccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatgattattggtaatttcctattttgagattctattttgagcaca |
19540892 |
T |
|
| Q |
233 |
ccagagtaatctagtgataaaactg |
257 |
Q |
| |
|
|||||||| |||||| ||||||||| |
|
|
| T |
19540893 |
ccagagtagtctagtaataaaactg |
19540917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 19592005 - 19591781
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
||||||||||| |||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19592005 |
ccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
19591906 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattctattttgagcaca |
232 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| | ||||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
19591905 |
acccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatgattattggtaatttcctattttgagattctattttgagcaca |
19591806 |
T |
|
| Q |
233 |
ccagagtaatctagtgataaaactg |
257 |
Q |
| |
|
|||||||| |||||| ||||||||| |
|
|
| T |
19591805 |
ccagagtagtctagtaataaaactg |
19591781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 19504326 - 19504544
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19504326 |
ccaacttcatcgttgagatcaaaatgtatgttggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
19504425 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggt---ttcctatcttgacattctattttgagcaca |
232 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| | |||||||| |||| ||||||||| |||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
19504426 |
accggtgtctaacatagtggccacagtgtcgttggttggttgaggcgaagagtaaatgattattggtaaattcctattttgaaattctattttgagcaca |
19504525 |
T |
|
| Q |
233 |
ccagagtaatctagtgata |
251 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
19504526 |
ccagagtagtctaatgata |
19504544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 19345017 - 19344790
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19345017 |
ccaacttcatcgttgggatcaaagtgtgatcgggataatcaaaactctgccataataaactatttgtcccatttgggtgaaattgttgaagcacaaagtt |
19344918 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacacca |
235 |
Q |
| |
|
||| |||||||| |||||||||| ||||||||| ||||||||||||| | ||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19344917 |
acctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgacgagtaaatgattattggtttcctattttatgattctattttgagcacacca |
19344818 |
T |
|
| Q |
236 |
gagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
|| ||||||||||||| ||||| ||||| |
|
|
| T |
19344817 |
gaataatctagtgatagaactgctgaat |
19344790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 263
Target Start/End: Complemental strand, 19448360 - 19448135
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||| || | | |||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
19448360 |
aacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaacacagtctttgacccattggggtgaaattgttgaagcacaaagttac |
19448261 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| |||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
19448260 |
ctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttgagcacaccaga |
19448161 |
T |
|
| Q |
238 |
gtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
19448160 |
ataatctagtgatagaactgctgaat |
19448135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 263
Target Start/End: Original strand, 19532716 - 19532941
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||| || | | |||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
19532716 |
aacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaacacagtctttgacccattggggtgaaattgttgaagcacaaagttac |
19532815 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| |||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
19532816 |
ctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttgagcacaccaga |
19532915 |
T |
|
| Q |
238 |
gtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
19532916 |
ataatctagtgatagaactgctgaat |
19532941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 19390439 - 19390218
Alignment:
| Q |
36 |
ccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagtt |
135 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
19390439 |
ccaacttcatcgttgggatcaaagtgtcgtcgggataatcaaaactctgccataataaactctttgtaccatttgggtgaaatttttgaagcacaaagtt |
19390340 |
T |
|
| Q |
136 |
acccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacacca |
235 |
Q |
| |
|
||| ||||||| |||||| |||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
19390339 |
accggtgtctagcatagttgccatagtgttgtttatgggttgaggtgaagagtaaatgattattggtttcctattttgagattctattttgagcacacca |
19390240 |
T |
|
| Q |
236 |
gagtaatctagtgataaaactg |
257 |
Q |
| |
|
| ||| | || ||||||||||| |
|
|
| T |
19390239 |
gtgtagtttaatgataaaactg |
19390218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 38 - 265
Target Start/End: Complemental strand, 19376463 - 19376236
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||| || | | |||||| |||||| || |||| |||||||||||||||||||| |
|
|
| T |
19376463 |
aacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaaaacagtctttgacccattgggatgaaattgttgaagcacaaagttac |
19376364 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| |||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
19376363 |
ctgtgtctaatatagtggccaaagtgttgtttattggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttgagcacaccaga |
19376264 |
T |
|
| Q |
238 |
gtaatctagtgataaaactgttgaatct |
265 |
Q |
| |
|
||| |||||||||| ||||| ||||||| |
|
|
| T |
19376263 |
gtagtctagtgatagaactgctgaatct |
19376236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 38 - 263
Target Start/End: Complemental strand, 19355319 - 19355091
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19355319 |
aacttcatcgttgggatcaaactatctgttggatagtcaaaactctgccatagtatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
19355220 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggt---ttcctatcttgacattctattttgagcacacc |
234 |
Q |
| |
|
| ||||||||||||||||||||||||| |||| | |||| ||| || |||||||| || ||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
19355219 |
ctgtgtctaacatagtggccacagtgtcgttggttggttcaggcaaataataaatgataatcggtacattcctattttgaaattctattttgagcacacc |
19355120 |
T |
|
| Q |
235 |
agagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| |
|
|
| T |
19355119 |
agagtagtctagtgatagaactgctgaat |
19355091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 265
Target Start/End: Complemental strand, 19337299 - 19337069
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
|||||||||||||| | |||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
19337299 |
aacttcatcgttggtaacaaagtgtctacgggagaatcaaaactctgccataatatactctttgtcccatttgggtgaagctgttgaagcacgaagttac |
19337200 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggt---ttcctatcttgacattctattttgagcacacc |
234 |
Q |
| |
|
| ||||||||||||||||||||||||| |||| | |||||||| ||| |||||||| |||||| ||||||| |||| ||||||||||||| ||||| |
|
|
| T |
19337199 |
cggtgtctaacatagtggccacagtgtcgttggttggttgaggcgaataataaatgataattggtacattcctattttgaaattctattttgagtacacc |
19337100 |
T |
|
| Q |
235 |
agagtaatctagtgataaaactgttgaatct |
265 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| |
|
|
| T |
19337099 |
agagtagtctagtgatagaactgctgaatct |
19337069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 19410653 - 19410434
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
||||||||| |||||||||||| || || |||||||||||||||||||| || | |||| ||| || || || ||| |||||||||||||||||||| |
|
|
| T |
19410653 |
aacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacacactcattgagccgttgggaagaaattgttgaagcacaaagttac |
19410554 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| | |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19410553 |
cggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatgattattggtttcctattttgagattctattttgagcacaccaga |
19410454 |
T |
|
| Q |
238 |
gtaatctagtgataaaactg |
257 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
19410453 |
gtagtctagtgatagaactg |
19410434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 19457672 - 19457453
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
||||||||| |||||||||||| || || |||||||||||||||||||| || | |||| ||| || || || ||| |||||||||||||||||||| |
|
|
| T |
19457672 |
aacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacacactcattgagccgttgggaagaaattgttgaagcacaaagttac |
19457573 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| | |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19457572 |
cggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatgattattggtttcctattttgagattctattttgagcacaccaga |
19457473 |
T |
|
| Q |
238 |
gtaatctagtgataaaactg |
257 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
19457472 |
gtagtctagtgatagaactg |
19457453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 19523406 - 19523625
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
||||||||| |||||||||||| || || |||||||||||||||||||| || | |||| ||| || || || ||| |||||||||||||||||||| |
|
|
| T |
19523406 |
aacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacacactcattgagccgttgggaagaaattgttgaagcacaaagttac |
19523505 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| | |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19523506 |
cggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatgattattggtttcctattttgagattctattttgagcacaccaga |
19523605 |
T |
|
| Q |
238 |
gtaatctagtgataaaactg |
257 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
19523606 |
gtagtctagtgatagaactg |
19523625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 19287560 - 19287338
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
19287560 |
aacttcattgttgggatcaaagtggctgtgggataatcaaaactctgccataatatattctttgtcccatttgggtgaattttttgaagcacaaagttac |
19287461 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattgg---tttcctatcttgacattctattttgagcacacc |
234 |
Q |
| |
|
| ||||||||||||||||| ||||| || ||| | || ||||| |||| ||||||||| || || |||||||| |||| ||||||||||||||||||| |
|
|
| T |
19287460 |
cggtgtctaacatagtggcgacagtattattggtcggatgaggcgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacacc |
19287361 |
T |
|
| Q |
235 |
agagtaatctagtgataaaactg |
257 |
Q |
| |
|
|||||| |||| ||||| ||||| |
|
|
| T |
19287360 |
agagtagtctaatgatagaactg |
19287338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 263
Target Start/End: Original strand, 19173086 - 19173308
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| || |||| || |||| ||||||||||||||| |
|
|
| T |
19173086 |
aacttcatcgttgggatcaaagtggttatgggataatcaaaactctgccataatatactctttgtcccgttggggtaaatttgtcgaagcacaaagttac |
19173185 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| |||||||| |||||||||| || |||| ||||||||||||||| | | ||||| ||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
19173186 |
ctgtgtctaatatagtggccaaag---tgtttatgggttgaggtgaagagcatatgattattggtttcctattttgtgattgtattttgagcacaccaga |
19173282 |
T |
|
| Q |
238 |
gtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
||||||||||| | ||||| ||||| |
|
|
| T |
19173283 |
ataatctagtgaaagaactgctgaat |
19173308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 265
Target Start/End: Complemental strand, 19404594 - 19404367
Alignment:
| Q |
38 |
aacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttac |
137 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||||||||||||||| || | | |||||| |||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
19404594 |
aacttcatcgttgggatcaaaacgtctgatgggtaatcaaaactctgccacaacacagtctttgacccattggggtgaaattgtcgaagcacaaagttac |
19404495 |
T |
|
| Q |
138 |
ccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccaga |
237 |
Q |
| |
|
| |||||||| ||||| |||| ||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
19404494 |
ctgtgtctaatatagtagccaaagtgttgtttatgggttgaggtgaagaataaatgataattggtttcctactttgtgattctattttgagcacaccgga |
19404395 |
T |
|
| Q |
238 |
gtaatctagtgataaaactgttgaatct |
265 |
Q |
| |
|
||| ||||| |||| ||||| ||||||| |
|
|
| T |
19404394 |
gtagtctagcgatagaactgctgaatct |
19404367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 67 - 263
Target Start/End: Original strand, 19468864 - 19469060
Alignment:
| Q |
67 |
gggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttg |
166 |
Q |
| |
|
||||||||||||||||||||| || | |||| ||| ||||| || |||| |||| |||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
19468864 |
gggataatcaaaactctgccacaacacactcattgagccattgggatgaaattgtcgaagcacaaagttacctgtgtctaatatagtggccatagtgttg |
19468963 |
T |
|
| Q |
167 |
ttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19468964 |
tttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19469060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 67 - 263
Target Start/End: Original strand, 19555785 - 19555981
Alignment:
| Q |
67 |
gggataatcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttg |
166 |
Q |
| |
|
||||||||||||||||||||| || | |||| ||| ||||| || |||| |||| |||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
19555785 |
gggataatcaaaactctgccacaacacactcattgagccattgggatgaaattgtcgaagcacaaagttacctgtgtctaatatagtggccatagtgttg |
19555884 |
T |
|
| Q |
167 |
ttgttgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19555885 |
tttatgggttgaggtgaagagtaaatgattattggtttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19555981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 19489886 - 19489728
Alignment:
| Q |
99 |
ttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcat |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| || |
|
|
| T |
19489886 |
ttgtcccatttgggtgaagttgttgaatcaccaagttaccggtgtctaacatagtggccaccgtgttgttggtgggttgagttgacaagtaaatgattat |
19489787 |
T |
|
| Q |
199 |
tggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
257 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19489786 |
tggtttcctattttgtgattctattttgagcgcaccagagtaggctagtgataaaactg |
19489728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 19468140 - 19468231
Alignment:
| Q |
171 |
tgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| || ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19468140 |
tgggttgaggtgaagagtaaatgattattggtttcc-attttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19468231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 19185115 - 19185068
Alignment:
| Q |
216 |
attctattttgagcacaccagagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
19185115 |
attctattttgagcacaccagagtagtctagtgatagaactgctgaat |
19185068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 16004341 - 16004306
Alignment:
| Q |
216 |
attctattttgagcacaccagagtaatctagtgata |
251 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16004341 |
attctattttgagcacaccagagtagtctagtgata |
16004306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 19458256 - 19458303
Alignment:
| Q |
216 |
attctattttgagcacaccagagtaatctagtgataaaactgttgaat |
263 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19458256 |
attctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19458303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 19542877 - 19542803
Alignment:
| Q |
73 |
atcaaaactctgccataatatactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaa |
147 |
Q |
| |
|
|||||||||||||||||| | ||| ||| ||||| ||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
19542877 |
atcaaaactctgccataaaacacttgttgaaccattggggtgaaattgttgaagaacaaagttaccggtgtctaa |
19542803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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