View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_63 (Length: 251)
Name: NF0552_low_63
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6855280 - 6855520
Alignment:
| Q |
1 |
ccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcaagggttttgacaacccggactgtatataactacat |
100 |
Q |
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| T |
6855280 |
ccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcgagggttttgacaacccggactgtatataactacat |
6855379 |
T |
|
| Q |
101 |
ttccaccatacttattcccaccaacatgaaaacaagcattaacaatatcttatttttcaggccacgaagcgcaatttgcaaagttcnnnnnnntctattt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6855380 |
ttccaccatacttattcccaccaacatgaaaacaagcattaacaatatattatttttcaggccacgaagcgcaatttgcaaagttcaaaaaaatctattt |
6855479 |
T |
|
| Q |
201 |
atccacagagaaatatcatcactaaaaataaggaagaataa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855480 |
atccacagagaaatatcatcactaaaaataaggaagaataa |
6855520 |
T |
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