View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_64 (Length: 251)

Name: NF0552_low_64
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_64
NF0552_low_64
[»] chr6 (14 HSPs)
chr6 (11-251)||(1842139-1842379)
chr6 (68-199)||(6473462-6473593)
chr6 (68-200)||(1828299-1828440)
chr6 (69-114)||(1822452-1822497)
chr6 (198-251)||(6526143-6526196)
chr6 (199-251)||(1828232-1828284)
chr6 (68-127)||(6525999-6526058)
chr6 (198-240)||(1827355-1827397)
chr6 (116-200)||(1827411-1827495)
chr6 (17-57)||(1846961-1847001)
chr6 (82-200)||(6516525-6516643)
chr6 (36-69)||(1828456-1828489)
chr6 (206-251)||(1839239-1839284)
chr6 (144-200)||(1839306-1839362)
[»] chr1 (1 HSPs)
chr1 (68-117)||(35244497-35244546)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 1842379 - 1842139
Alignment:
Q  11 cacagaacactaataaccttattatttttagtaaactctttctcataaatatttcctccacattttagcagcaagaatttccaatgatgtaagtgttgat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1842379 cacagaacactaataaccttattatttttagtaaactctttctcatacatatttcctccacatttttgcagcaagaatttccaatgatgtaagtgttgat 1842280  T
Q  111 gcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatagtatgcattcacgacttcgctagtgctctcttgaattcagttag 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842279 gcaatggctgcaagttcaacatcttcttatattatacgaatcaaggctgcagaatagtatgcattcacgacttcgctagtgctctcttgaattcagttag 1842180  T
Q  211 ccctccagctcaagagtgtaatttacaaagatcgaaacacc 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1842179 ccctccagctcaagagtgtaatttacaaagatcgaaacacc 1842139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 6473593 - 6473462
Alignment:
Q  68 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatag 167  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | ||||  |||||  |||| |  |||   ||||| ||||| ||||||||||||    
T  6473593 ccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgcagaatag 6473494  T
Q  168 tatgcattcacgacttcgctagtgctctcttg 199  Q
    |||||||||||| |||| ||||| ||||||||    
T  6473493 tatgcattcacggcttcactagtactctcttg 6473462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 1828440 - 1828299
Alignment:
Q  68 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttat---------attataccaatcaaggct 158  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||| |||||| | |||  ||||||| |||         |  |||||||||||||||    
T  1828440 ccacattttagcagcaagaacttccaatgacgcaagtgttgatgcaacggctgcgaattccgcatcttcatataccatagtaaccataccaatcaaggct 1828341  T
Q  159 gcagaatagtatgcattcacgacttcgctagtgctctcttga 200  Q
    || |||||||||||||||||  | || |||||||||||||||    
T  1828340 gcggaatagtatgcattcactgcatcactagtgctctcttga 1828299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 1822497 - 1822452
Alignment:
Q  69 cacattttagcagcaagaatttccaatgatgtaagtgttgatgcaa 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1822497 cacattttagcagaaagaatttccaatgatgtaagtgttgatgcaa 1822452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 6526143 - 6526196
Alignment:
Q  198 tgaattcagttagccctccagctcaagagtgtaatttacaaagatcgaaacacc 251  Q
    ||||||| |||||||||||||| ||||||||||||||| | |||||||||||||    
T  6526143 tgaattctgttagccctccagcccaagagtgtaatttatacagatcgaaacacc 6526196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 1828284 - 1828232
Alignment:
Q  199 gaattcagttagccctccagctcaagagtgtaatttacaaagatcgaaacacc 251  Q
    |||||| ||||||||||| || ||||||||||||||| |||||||||||||||    
T  1828284 gaattctgttagccctccggcccaagagtgtaatttataaagatcgaaacacc 1828232  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 6525999 - 6526058
Alignment:
Q  68 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttc 127  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||| | ||||| |||||    
T  6525999 ccacattttagcagcaagaatttcaaatgatgcaagtgtcgatgcagtcgctgcgagttc 6526058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 1827397 - 1827355
Alignment:
Q  198 tgaattcagttagccctccagctcaagagtgtaatttacaaag 240  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  1827397 tgaattcagttagccctccagcccaagagtgtagtttacaaag 1827355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 1827495 - 1827411
Alignment:
Q  116 ggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatagtatgcattcacgacttcgctagtgctctcttga 200  Q
    |||||| |||||| ||||||| ||||  |||  |||||||||||||||||| ||||||||||   |||| |||| ||||||||||    
T  1827495 ggctgcgagttcagcatcttcatataccatagtaatcaaggctgcagaataatatgcattcattgcttcactagcgctctcttga 1827411  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 1847001 - 1846961
Alignment:
Q  17 acactaataaccttattatttttagtaaactctttctcata 57  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  1847001 acactaataaccttattattgttagtaaacactttctcata 1846961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 6516643 - 6516525
Alignment:
Q  82 caagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatagtatgcattcacgac 181  Q
    ||||||||||||||||||| |||||||||||||| |   |||||| |  |||  | |||   || || || |||||||||| |||||||||||||||  |    
T  6516643 caagaatttccaatgatgttagtgttgatgcaattgacacaagttgaggatcaccatatgccattcccattaaggctgcagcatagtatgcattcacagc 6516544  T
Q  182 ttcgctagtgctctcttga 200  Q
    ||| ||||| |||||||||    
T  6516543 ttcactagtactctcttga 6516525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 1828489 - 1828456
Alignment:
Q  36 ttttagtaaactctttctcataaatatttcctcc 69  Q
    |||||||||||||||||||||| |||||||||||    
T  1828489 ttttagtaaactctttctcatacatatttcctcc 1828456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 1839284 - 1839239
Alignment:
Q  206 gttagccctccagctcaagagtgtaatttacaaagatcgaaacacc 251  Q
    ||||||||||| || ||||||||||||||| ||||||| |||||||    
T  1839284 gttagccctccggcccaagagtgtaatttataaagatctaaacacc 1839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 1839362 - 1839306
Alignment:
Q  144 ataccaatcaaggctgcagaatagtatgcattcacgacttcgctagtgctctcttga 200  Q
    ||||||||||| |||| ||||||||||||||||||   ||| |||||||| ||||||    
T  1839362 ataccaatcaaagctgaagaatagtatgcattcactgattcactagtgctatcttga 1839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 35244546 - 35244497
Alignment:
Q  68 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatgg 117  Q
    ||||| ||||||||||  |||||||||||||| |||||||||| ||||||    
T  35244546 ccacaatttagcagcacaaatttccaatgatgcaagtgttgatccaatgg 35244497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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