View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_65 (Length: 248)

Name: NF0552_low_65
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_65
NF0552_low_65
[»] chr3 (15 HSPs)
chr3 (1-238)||(31769966-31770203)
chr3 (2-234)||(15792771-15793003)
chr3 (139-207)||(7935577-7935645)
chr3 (141-235)||(48743891-48743985)
chr3 (140-235)||(5789919-5790014)
chr3 (143-239)||(35216342-35216438)
chr3 (44-107)||(9509498-9509561)
chr3 (44-107)||(9517473-9517536)
chr3 (140-207)||(21400018-21400085)
chr3 (140-185)||(13700564-13700609)
chr3 (148-188)||(11237460-11237500)
chr3 (7-75)||(15279332-15279400)
chr3 (65-113)||(17619779-17619827)
chr3 (7-91)||(21400134-21400218)
chr3 (152-188)||(31921800-31921836)
[»] chr6 (7 HSPs)
chr6 (1-238)||(27580599-27580836)
chr6 (1-238)||(27317000-27317237)
chr6 (2-233)||(31706380-31706611)
chr6 (8-189)||(32185338-32185519)
chr6 (8-87)||(14497893-14497972)
chr6 (146-235)||(19349552-19349641)
chr6 (1-69)||(29977314-29977382)
[»] chr2 (9 HSPs)
chr2 (2-235)||(8384415-8384648)
chr2 (158-238)||(11579996-11580076)
chr2 (146-235)||(18634572-18634661)
chr2 (146-207)||(1159391-1159452)
chr2 (146-189)||(6728221-6728264)
chr2 (131-189)||(44941243-44941301)
chr2 (138-235)||(6823021-6823118)
chr2 (148-189)||(11196004-11196045)
chr2 (158-235)||(31265832-31265909)
[»] chr1 (3 HSPs)
chr1 (2-234)||(19014971-19015203)
chr1 (137-235)||(38204302-38204400)
chr1 (149-186)||(5287655-5287692)
[»] scaffold0246 (1 HSPs)
scaffold0246 (6-234)||(21710-21938)
[»] chr4 (6 HSPs)
chr4 (6-234)||(40483771-40483999)
chr4 (2-234)||(42272547-42272780)
chr4 (32-235)||(52619394-52619597)
chr4 (136-231)||(32348742-32348837)
chr4 (146-189)||(40687720-40687763)
chr4 (149-186)||(52814143-52814180)
[»] chr5 (8 HSPs)
chr5 (8-189)||(42040006-42040187)
chr5 (143-235)||(379520-379612)
chr5 (8-168)||(42258954-42259114)
chr5 (136-235)||(5909497-5909596)
chr5 (131-189)||(22179408-22179466)
chr5 (8-105)||(40167672-40167769)
chr5 (134-235)||(13735320-13735421)
chr5 (140-233)||(26904557-26904650)
[»] chr7 (6 HSPs)
chr7 (2-234)||(44846077-44846309)
chr7 (2-192)||(37547178-37547372)
chr7 (144-238)||(8753830-8753924)
chr7 (146-207)||(27096777-27096838)
chr7 (146-207)||(27181465-27181526)
chr7 (8-84)||(8723429-8723505)
[»] chr8 (6 HSPs)
chr8 (143-240)||(15438771-15438868)
chr8 (143-240)||(15530075-15530172)
chr8 (1-235)||(35183048-35183282)
chr8 (158-238)||(42579901-42579981)
chr8 (140-186)||(12247982-12248028)
chr8 (157-235)||(36698880-36698958)
[»] scaffold0048 (1 HSPs)
scaffold0048 (74-180)||(64121-64227)
[»] scaffold0321 (1 HSPs)
scaffold0321 (143-235)||(17615-17707)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31769966 - 31770203
Alignment:
Q  1 cttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769966 cttcttccaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgt 31770065  T
Q  101 aataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31770066 aataataggatttttaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 31770165  T
Q  201 ttgtgtatgacactcagagatggtggtcggaccctatg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31770166 ttgtgtatgacactcagagatggtggtcggaccctatg 31770203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 15793003 - 15792771
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgta 101  Q
    ||||| ||||||| ||||||||||||||  | ||||||||   |||| || || ||||||||||||||||| ||||| || ||| | ||| | |||||||    
T  15793003 ttcttccaatttactcattatacaggttatttaaaggctcttcgatcatttctccaattactttggcttctgtgtgtttgactgttgtggagtgaacgta 15792904  T
Q  102 ataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtt 201  Q
    |||| |||||||  || ||| ||||||  |||||| ||||||||||||||   || ||||| |||  ||| |||||||| || ||||| ||  |||| ||    
T  15792903 ataacaggattttcaataacatagaaactcctattgtacagcttttagatcgtgttaaattccatgttttatggtggcttaaggctaataatgctacttt 15792804  T
Q  202 tgtgtatgacactcagagatggtggtcggaccc 234  Q
    |||||| |   ||||||||||||||| ||||||    
T  15792803 tgtgtacggttctcagagatggtggttggaccc 15792771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 7935645 - 7935577
Alignment:
Q  139 acagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgta 207  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||| || || || || ||||||||    
T  7935645 acagctgttagataaagtaaaatttcattctttgtggtggcttaaagccaacaaaaccacttttgtgta 7935577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 48743891 - 48743985
Alignment:
Q  141 agcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||| |||| |||| |||||||||||| || |||||  |||| ||||| ||||  || |||||||| ||| |||||||||||||||||||||||    
T  48743891 agcttgtagaaaaagcaaaatttcattcgttttggtgtttaaatgctaataacaacacttttgtgtacgactctcagagatggtggtcggaccct 48743985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 5789919 - 5790014
Alignment:
Q  140 cagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    |||||| |||| |||| |||||||||||  || |||||| |||||||||| ||||| || |||||||| | | || |||||||||||| |||||||    
T  5789919 cagcttgtagaaaaagcaaaatttcatttgttttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccct 5790014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 35216342 - 35216438
Alignment:
Q  143 cttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatgc 239  Q
    |||||||| ||||| ||||||||||  || |||||||| || ||||| ||| | |  |||||||| |  |||||||||||||||| |||||||||||    
T  35216342 cttttagagaaagttaaatttcatttgttatggtggcttaaggctaagaacgccaattttgtgtacggtactcagagatggtggttggaccctatgc 35216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 9509561 - 9509498
Alignment:
Q  44 agatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataata 107  Q
    ||||| |||||||  ||||| |||||||||||||| ||||| ||||||  ||||||||||||||    
T  9509561 agatcattccttctgttactgtggcttctttgtgtttggctcatatggaaagaacgtaataata 9509498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 9517536 - 9517473
Alignment:
Q  44 agatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataata 107  Q
    ||||| |||||||  ||||| |||||||||||||| ||||| ||||||  ||||||||||||||    
T  9517536 agatcattccttctgttactgtggcttctttgtgtttggctcatatggaaagaacgtaataata 9517473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 21400085 - 21400018
Alignment:
Q  140 cagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgta 207  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||||| || || || || ||||||||    
T  21400085 cagctattagataaagttaaatttcattcgttgtggtggcttaaagccaataataccacttttgtgta 21400018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 13700564 - 13700609
Alignment:
Q  140 cagcttttagataaagtaaaatttcattctttgtggtggctaaaag 185  Q
    ||||| ||||||||||||||||||||||  ||||||||||| ||||    
T  13700564 cagctgttagataaagtaaaatttcatttcttgtggtggcttaaag 13700609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 11237500 - 11237460
Alignment:
Q  148 agataaagtaaaatttcattctttgtggtggctaaaagcta 188  Q
    ||||||||||||||| || ||||| ||||||||||||||||    
T  11237500 agataaagtaaaattgcactctttatggtggctaaaagcta 11237460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 15279400 - 15279332
Alignment:
Q  7 tcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttg 75  Q
    |||||||||||||||| ||||||  ||||||||||  || ||||| ||||||||  ||||||| |||||    
T  15279400 tcaatttattcattattcaggttattcaaaggctcaaaggtcgtttcttcaattgatttggctgctttg 15279332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 17619827 - 17619779
Alignment:
Q  65 tggcttctttgtgtctggctgatatggggagaacgtaataataggattt 113  Q
    |||||||||||||| ||||| ||||||  ||||||||||||||| ||||    
T  17619827 tggcttctttgtgtgtggctcatatggaaagaacgtaataatagaattt 17619779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 21400218 - 21400134
Alignment:
Q  7 tcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatgg 91  Q
    ||||||||| |||||| ||||||  |||||||||||  |||| ||  | |||||| | |||||||||||||| ||| ||||||||    
T  21400218 tcaatttatccattattcaggttattcaaaggctcgtcgatcatttttacaattattatggcttctttgtgtgtggatgatatgg 21400134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 31921800 - 31921836
Alignment:
Q  152 aaagtaaaatttcattctttgtggtggctaaaagcta 188  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  31921800 aaagtaaaattacattctttatggtggctaaaagcta 31921836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27580836 - 27580599
Alignment:
Q  1 cttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgt 100  Q
    |||||| ||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27580836 cttcttccaatttactcagtatacaggttcatcaaaggctcgctgagcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgc 27580737  T
Q  101 aataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 200  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27580736 aataataggatttttaacagcgtagaaacgcctattttacagcttttaaataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 27580637  T
Q  201 ttgtgtatgacactcagagatggtggtcggaccctatg 238  Q
    ||||||||| |||||| |||||||||||||| ||||||    
T  27580636 ttgtgtatggcactcacagatggtggtcggatcctatg 27580599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27317237 - 27317000
Alignment:
Q  1 cttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgt 100  Q
    |||||| ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||      
T  27317237 cttcttccaatttactcattatacaggttcatcaaaggctcgccgaacgttccttcaattactttgggttctttgtgtctggctgatatggggagaacac 27317138  T
Q  101 aataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 200  Q
    ||||||| ||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27317137 aataataagatttttaacagcatagaaacgcctattttacaacttttaaataaagtaaaatttcattctttgaggtggctaaaagctaaaaacactacgt 27317038  T
Q  201 ttgtgtatgacactcagagatggtggtcggaccctatg 238  Q
    ||||||||| |||||| | |||||||||||| ||||||    
T  27317037 ttgtgtatggcactcacatatggtggtcggatcctatg 27317000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 31706611 - 31706380
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgta 101  Q
    |||||||||||||||||||| ||||||   |||||||| ||  | |||||  | |||||| |||||||||||||||| |||||| ||||| | ||||  |    
T  31706611 ttctttcaatttattcattacacaggtcattcaaaggcgcgtcggtcgtttttccaattaatttggcttctttgtgtttggctgctatggagtgaacaca 31706512  T
Q  102 ataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtt 201  Q
    |||| | ||| |  |||||| | ||||  |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||  | |||||    
T  31706511 ataacatgatattcaacaacattgaaactcctattttacagctcttagataaagttaaattccattcgttatggtggctaaaagctaataatgccacgtt 31706412  T
Q  202 tgtgtatgacactcagagatggtggtcggacc 233  Q
    |||||  | | |||||||||||||||||||||    
T  31706411 tgtgtgcggctctcagagatggtggtcggacc 31706380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 32185519 - 32185338
Alignment:
Q  8 caatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataata 107  Q
    |||||||||||||||||||| ||||| ||||| ||| |  | || ||||||||| | | ||||||| |||| ||||| |||||| | ||||| || || |    
T  32185519 caatttattcattatacaggatcatctaaggcccgctgtgcttttcttcaattattgtagcttcttggtgtttggctaatatggagtgaacgcaacaaca 32185420  T
Q  108 ggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
       | | ||| ||||| ||||  ||||| ||||||||| |||||||||||||||| ||||| || |||||| |||| |||||    
T  32185419 aagtatttaaaaacgttgaaactcctatattacagcttctagataaagtaaaattccattcattatggtgggtaaaggctaa 32185338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 14497972 - 14497893
Alignment:
Q  8 caatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgat 87  Q
    |||||||||||||||||||||   |||||||||||  |||||||| | |||||| | |||||||||||||| || |||||    
T  14497972 caatttattcattatacaggtcattcaaaggctcgtcgatcgttcttacaattaatctggcttctttgtgtttgactgat 14497893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 19349641 - 19349552
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||| || ||||||| ||||||||| ||||||||||| ||  | || ||||||||||||||||   |||| |  |||||||||||||||    
T  19349641 ttagaaaaggtaaaatatcattctttatggtggctaaaggcccataatactacgtttgtgtatggttctcataattggtggtcggaccct 19349552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29977314 - 29977382
Alignment:
Q  1 cttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggct 69  Q
    ||||| ||| |||||||||||| ||||||  ||||||||||| || ||||| ||||||||  |||||||    
T  29977314 cttctatcagtttattcattattcaggttattcaaaggctcgaaggtcgtttcttcaattgatttggct 29977382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 8384648 - 8384415
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgta 101  Q
    ||||||||||||| |||||||||||||   |||||||||||| ||||||| || ||||||||||||||||| ||||||||| || | | | | |||||||    
T  8384648 ttctttcaatttactcattatacaggtcattcaaaggctcgccgatcgtttctccaattactttggcttctgtgtgtctggttgctctagagtgaacgta 8384549  T
Q  102 ataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtt 201  Q
    |||| | ||| |  |||||| || |||  |||||||||||||| |||||| | || ||||||||||| ||  |||| || || ||||| ||   ||| ||    
T  8384548 ataacaagatattcaacaacatataaactcctattttacagctcttagatcatgttaaatttcattcgttaaggtgacttaaggctaagaatgttacatt 8384449  T
Q  202 tgtgtatgacactcagagatggtggtcggaccct 235  Q
    |||| | |   |||||||||||||||||||||||    
T  8384448 tgtgcacgtttctcagagatggtggtcggaccct 8384415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 11579996 - 11580076
Alignment:
Q  158 aaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatg 238  Q
    |||||||||||||||||||||||||| ||||| ||| |  |||||||| ||||||||||||  ||||||||| ||||||||    
T  11579996 aaatttcattctttgtggtggctaaaggctaataacgcctcgtttgtgcatgacactcagatgtggtggtcgaaccctatg 11580076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 18634661 - 18634572
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||| ||||| ||||||||||  || ||||| || |||||||| || || ||||||||||||| | |||||||||||||||||||||||    
T  18634661 ttagaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccct 18634572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 1159391 - 1159452
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgta 207  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||| || || ||||||||    
T  1159391 ttagataaagttaaatttcattcgttgtggtggcttaaagctaaaaaaaccacttttgtgta 1159452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 6728221 - 6728264
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
    |||||||||||||| | |||||||||||||||||| ||||||||    
T  6728221 ttagataaagtaaagtatcattctttgtggtggctgaaagctaa 6728264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 44941243 - 44941301
Alignment:
Q  131 cctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
    |||||| | ||||| | |||||||||||| |||||||| || |||||||||||||||||    
T  44941243 cctattgttcagctctcagataaagtaaagtttcattcgttttggtggctaaaagctaa 44941301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 6823118 - 6823021
Alignment:
Q  138 tacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||||| ||||| |||| ||||| |||||| || |||||| |||||||||| ||||| |  |||||||| |   |||| |||||||||||| |||||    
T  6823118 tacagctgttagaaaaagcaaaatatcattcgttatggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaaccct 6823021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 11196045 - 11196004
Alignment:
Q  148 agataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  11196045 agataaagtaaaatttcactctttatggtggcttaaagctaa 11196004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 31265909 - 31265832
Alignment:
Q  158 aaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||| ||||| || | ||||||||||||| | || || || |||||||||||  |||| ||||||||||||||||||    
T  31265909 aaattccattcgttttagtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccct 31265832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 19014971 - 19015203
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgta 101  Q
    ||||||||||||| | |||||||||||   ||||||||||   |||| || || ||||||||||| ||||| ||||| |||||| | ||| | ||| |||    
T  19014971 ttctttcaatttacttattatacaggtcattcaaaggctcatcgatcatttctccaattactttgacttctgtgtgtttggctgctctggagtgaatgta 19015070  T
Q  102 ataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtt 201  Q
    |||| | ||| | ||||||| ||||||  ||||||||||||||||||||| | || |||||||||||||| |||||||| || ||||| ||  |||| ||    
T  19015071 ataacatgatatttaacaacttagaaactcctattttacagcttttagatcatgttaaatttcattctttatggtggcttaaggctaagaatgctacatt 19015170  T
Q  202 tgtgtatgacactcagagatggtggtcggaccc 234  Q
    |||| |   | |||| |||||||||||| ||||    
T  19015171 tgtgcacagctctcaaagatggtggtcgaaccc 19015203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 38204302 - 38204400
Alignment:
Q  137 ttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    |||||||| ||||||||||| || ||| |||| || | ||||||||||||||| ||  |||| |||||||| ||| | || ||||||||||||||||||    
T  38204302 ttacagctcttagataaagtgaagtttaattcgttttagtggctaaaagctaataatgctacatttgtgtacgactcgcaaagatggtggtcggaccct 38204400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 5287692 - 5287655
Alignment:
Q  149 gataaagtaaaatttcattctttgtggtggctaaaagc 186  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  5287692 gataaagtaaaatttcattcgttgtggtggcttaaagc 5287655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 21938 - 21710
Alignment:
Q  6 ttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataa 105  Q
    |||||||||| ||||||| ||||   |||||| ||||  | || || || ||||||||||||||||| ||||| ||| |||| ||| |||||||||||||    
T  21938 ttcaatttatgcattataaaggtcattcaaagtctcgacgctcttttctccaattactttggcttctgtgtgtttggttgatctggagagaacgtaataa 21839  T
Q  106 taggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtg 205  Q
     | | | |  |||||| ||||||  |||||||||||| | |||||| |||| |||||||||||| | |||||||| |||| ||| ||  | |||||||||    
T  21838 caaggtattcaacaacatagaaactcctattttacagttattagatcaagttaaatttcattctatatggtggcttaaagttaataatgccacgtttgtg 21739  T
Q  206 tatgacactcagagatggtggtcggaccc 234  Q
     | |   ||||||||||||||||||||||    
T  21738 cacggttctcagagatggtggtcggaccc 21710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 40483999 - 40483771
Alignment:
Q  6 ttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataa 105  Q
    |||||||||| ||||||| ||||   |||||| ||||  | || || || ||||||||||||||||| ||||| ||| |||| ||| |||||||||||||    
T  40483999 ttcaatttatgcattataaaggtcattcaaagtctcgacgctcttttctccaattactttggcttctgtgtgtttggttgatctggagagaacgtaataa 40483900  T
Q  106 taggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtg 205  Q
     | | | |  |||||| ||||||  |||||||||||| | |||||| |||| |||||||||||| | |||||||| |||| ||| ||  | |||||||||    
T  40483899 caaggtattcaacaacatagaaactcctattttacagttattagatcaagttaaatttcattctatatggtggcttaaagttaataatgccacgtttgtg 40483800  T
Q  206 tatgacactcagagatggtggtcggaccc 234  Q
     | |   ||||||||||||||||||||||    
T  40483799 cacggttctcagagatggtggtcggaccc 40483771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 42272780 - 42272547
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgca-gatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgt 100  Q
    ||||||||||||| |||||||||||||   |||||||||| |  | ||||| |||||||| || |||||| | ||||| ||||||||  || | ||| |     
T  42272780 ttctttcaatttactcattatacaggtcattcaaaggctcacccgctcgttgcttcaattgctctggcttttatgtgtgtggctgatcgggagtgaatgc 42272681  T
Q  101 aataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 200  Q
    ||||| ||||| |  |||||  ||||||  ||||||||| |||| |||||| | || |||||||||||||| |||||||| || ||||||||  | || |    
T  42272680 aataacaggatattcaacaatttagaaactcctattttaaagctcttagatcaggttaaatttcattctttatggtggcttaaggctaaaaatgccacat 42272581  T
Q  201 ttgtgtatgacactcagagatggtggtcggaccc 234  Q
    ||||| | |  | |||||||||||||||||||||    
T  42272580 ttgtgaacggtattcagagatggtggtcggaccc 42272547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 52619394 - 52619597
Alignment:
Q  32 tcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataataggatttgtaacaacgtagaaatgc 131  Q
    |||||||||| ||  |||||| | |||||| |||| ||||||||||| |||||| | |||   ||||| ||||| ||| | |  || ||| | ||||  |    
T  52619394 tcaaaggctcacatgtcgttcttacaattaatttgacttctttgtgtgtggctggtgtggaatgaacgcaataacagggtgttcaataacattgaaacac 52619493  T
Q  132 ctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcgga 231  Q
    | ||||||||||||||  ||||||  |||||||||||  | |||||||||||||| |||||||| |  ||||||||   | |||||||||||||||||||    
T  52619494 cgattttacagcttttcaataaagctaaatttcattcgctttggtggctaaaagccaaaaacaccaattttgtgtacagctctcagagatggtggtcgga 52619593  T
Q  232 ccct 235  Q
    ||||    
T  52619594 ccct 52619597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 32348742 - 32348837
Alignment:
Q  136 tttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcgga 231  Q
    |||||||||| ||||||||||||||||||| || |  |||||||| |||||||| | | | | ||||||||| |   |||||||||||||||||||    
T  32348742 tttacagcttctagataaagtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcgga 32348837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 40687763 - 40687720
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
    |||||||||||||| | |||||||||||||||||| ||||||||    
T  40687763 ttagataaagtaaagtatcattctttgtggtggctgaaagctaa 40687720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 52814180 - 52814143
Alignment:
Q  149 gataaagtaaaatttcattctttgtggtggctaaaagc 186  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  52814180 gataaagtaaaatttcattcgttgtggtggcttaaagc 52814143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 42040006 - 42040187
Alignment:
Q  8 caatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataata 107  Q
    ||||||||||||||||||||||| || || |||||  | ||||| ||||||||| | ||||||||| || | |||||||||||| | |||| ||||||||    
T  42040006 caatttattcattatacaggttcctctaaagctcgtcgttcgtttcttcaattattgtggcttcttggtatttggctgatatggagtgaacataataata 42040105  T
Q  108 ggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
    |  |||  || ||| | ||||  ||||| |||||| |||| || ||||||||||| ||||| || ||||||||||| |||||    
T  42040106 gagttttcaaaaacattgaaactcctatcttacagttttttgaaaaagtaaaattgcattcattatggtggctaaaggctaa 42040187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 379612 - 379520
Alignment:
Q  143 cttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    |||||||| ||||| ||||||||||| || |||||||| || ||||| ||| |||  |||||||| || |||||||| |||||||||||||||    
T  379612 cttttagagaaagttaaatttcattcgttatggtggcttaaggctaagaacgctaattttgtgtacgatactcagagttggtggtcggaccct 379520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 42259114 - 42258954
Alignment:
Q  8 caatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataata 107  Q
    ||||||||||||||||||||||| | ||| | |||  | | ||| ||||||||||| ||||||||| |||| |||||||||||| | |||||| |||| |    
T  42259114 caatttattcattatacaggttccttaaaagttcgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataaca 42259015  T
Q  108 ggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattc 168  Q
    |  | |  || || || ||||  ||||| || ||||||||||| ||||||||||| |||||    
T  42259014 gagtattcaaaaatgtcgaaactcctatctttcagcttttagaaaaagtaaaattccattc 42258954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 5909497 - 5909596
Alignment:
Q  136 tttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    |||||||||| |||| |||||||||||||| || |  |||||||| ||||| || ||| | || |||||||| ||  |||||||||||||||||||||||    
T  5909497 tttacagcttctagagaaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccct 5909596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 22179408 - 22179466
Alignment:
Q  131 cctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaa 189  Q
    ||||||||||| ||| |||| |||||||| |||||||| || |||||||||||||||||    
T  22179408 cctattttacaacttctagagaaagtaaagtttcattcattttggtggctaaaagctaa 22179466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 40167672 - 40167769
Alignment:
Q  8 caatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataa 105  Q
    |||||||||||||||| |  ||| ||||| |||||| | || || ||||||||| | ||||||||| |||| ||||||||| || | |||||||||||    
T  40167672 caatttattcattatataaattcctcaaaagctcgctgttcttttcttcaattattgtggcttcttggtgtttggctgatacggagtgaacgtaataa 40167769  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 13735320 - 13735421
Alignment:
Q  134 attttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggacc 233  Q
    |||||||||| |||||| |||| ||||||||||    | |||||| |||||||||| || || || |||||||| | | || |||||||||||||| |||    
T  13735320 attttacagcatttagagaaagcaaaatttcatctgctttggtggttaaaagctaataataccacttttgtgtacggctcttagagatggtggtcgaacc 13735419  T
Q  234 ct 235  Q
    ||    
T  13735420 ct 13735421  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 26904557 - 26904650
Alignment:
Q  140 cagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggacc 233  Q
    ||||| ||||| || | ||||| ||||||||| || |||||||| ||| | ||||| | |||||||||||   ||||||| |||||||||||||    
T  26904557 cagctattagaaaaggcaaaatatcattctttatgttggctaaaggctcataacaccatgtttgtgtatggttctcagagttggtggtcggacc 26904650  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 44846077 - 44846309
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgta 101  Q
    ||||||||||||| |||||||||||||   ||||||||||   |||| || || |||||||||||||||||  || | ||| |||| ||| | |||||||    
T  44846077 ttctttcaatttactcattatacaggtcattcaaaggctctacgatcttttctacaattactttggcttctgagtctttggttgatctggagtgaacgta 44846176  T
Q  102 ataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtt 201  Q
    |||| |   | |  |||||| ||||||  |||||||||||| | |||||| |||| |||||||||||||| |||||  | |||||||| || || || ||    
T  44846177 ataacatcgtattcaacaacatagaaactcctattttacagttattagatcaagttaaatttcattctttatggtgatttaaagctaataataccacatt 44846276  T
Q  202 tgtgtatgacactcagagatggtggtcggaccc 234  Q
    |||| | |   |||||||||| |||| ||||||    
T  44846277 tgtgcacggttctcagagatgatggttggaccc 44846309  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 37547178 - 37547372
Alignment:
Q  2 ttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtct-ggctgatat-ggggagaacg 99  Q
    ||||||||||||| ||| ||||| |||   |||||||| | | |||| || || ||||||||||||||||||||||| | ||||| ||| |||| |||||    
T  37547178 ttctttcaatttactcactataccggtcactcaaaggcacaccgatcatttctccaattactttggcttctttgtgtgtgggctgctatgggggtgaacg 37547277  T
Q  100 taataataggatttgtaacaacgtagaaatgcctat---tttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaa 192  Q
    |||||| | ||| |  |||||| |||||| | ||||   | |||| || ||||||||||| ||||| |||||||| | |||||| |||||||||||    
T  37547278 taataacaagatattcaacaacatagaaacgtctattaatatacaactattagataaagttaaattccattcttt-ttgtggcttaaagctaaaaa 37547372  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 8753830 - 8753924
Alignment:
Q  144 ttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatg 238  Q
    |||||||  |||| ||||||||||| |  |||||||| |||||||||||  | | ||||||||| |    |||||||||||||||||||||||||    
T  8753830 ttttagacgaagttaaatttcattcgtattggtggctcaaagctaaaaatgccatgtttgtgtacggttttcagagatggtggtcggaccctatg 8753924  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 27096838 - 27096777
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgta 207  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| || || || || ||||||||    
T  27096838 ttagataaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgta 27096777  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 27181465 - 27181526
Alignment:
Q  146 ttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgta 207  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| || || || || ||||||||    
T  27181465 ttagataaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgta 27181526  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 8723429 - 8723505
Alignment:
Q  8 caatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggct 84  Q
    |||||||||||||||||| ||   |||||||| ||  |||| ||||||||| |||| ||||| |||||||| |||||    
T  8723429 caatttattcattatacaagtcattcaaaggcgcgacgatcattccttcaactactctggctcctttgtgtttggct 8723505  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 15438868 - 15438771
Alignment:
Q  143 cttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatgct 240  Q
    |||||||| ||||| |||||||||||  | |||||||| || ||||| ||||| |  |||||||| || ||| |||||||||||||||||||||||||    
T  15438868 cttttagagaaagttaaatttcattcgctttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgct 15438771  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 15530172 - 15530075
Alignment:
Q  143 cttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatgct 240  Q
    |||||||| ||||| |||||||||||  | |||||||| || ||||| ||||| |  |||||||| || ||| |||||||||||||||||||||||||    
T  15530172 cttttagagaaagttaaatttcattcgctttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgct 15530075  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 35183048 - 35183282
Alignment:
Q  1 cttctttcaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgt 100  Q
    ||||| ||| |||||||||||| ||||||  ||||||||||| || ||||| ||||||||| ||||||| ||||| || |||||  | |||   ||||||    
T  35183048 cttctatcagtttattcattattcaggttattcaaaggctcgaaggtcgtttcttcaattaatttggctgctttgcgtttggctcttgtggacggaacgt 35183147  T
Q  101 aataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgt 200  Q
    ||||| ||| | | ||| ||  |||| |  | ||||    | || ||||| || ||||||| ||||||||| ||||||||||| ||| | || |||| ||    
T  35183148 aataacaggttatttaataatatagagacacttattgagaacctattagaaaaggtaaaatatcattctttatggtggctaaaggctcataatactatgt 35183247  T
Q  201 ttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||||||||  |||| |  |||||||||||||||    
T  35183248 ttgtgtatgattctcataattggtggtcggaccct 35183282  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 42579901 - 42579981
Alignment:
Q  158 aaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatg 238  Q
    |||||| |||| |||||||||||||| ||||| ||  |  |||||||| ||||||||||||  ||||||||| ||||||||    
T  42579901 aaatttgattccttgtggtggctaaaggctaataatgcctcgtttgtgcatgacactcagatgtggtggtcgaaccctatg 42579981  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 12247982 - 12248028
Alignment:
Q  140 cagcttttagataaagtaaaatttcattctttgtggtggctaaaagc 186  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  12247982 cagctcttagataaagttaaatttcattcgttgtggtggcttaaagc 12248028  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 36698880 - 36698958
Alignment:
Q  157 aaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    ||||| ||||||||| ||||||||||| ||| | || |||| ||||||||||||| |||| |  |||| ||||||||||    
T  36698880 aaaatatcattctttatggtggctaaaggctcataatactatgtttgtgtatgactctcataattggtagtcggaccct 36698958  T

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Target: scaffold0048 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 64121 - 64227
Alignment:
Q  74 tgtgtctggctgatatggggagaacgtaataataggatttgtaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattctttgt 173  Q
    ||||| |||||||||||| | ||||| ||||||| ||| |  || ||  ||||||  |||||| |||||||||||||||| |  |||||||||||||| |    
T  64121 tgtgtttggctgatatggagtgaacggaataataagatattcaataatatagaaactcctattatacagcttttagataatgctaaatttcattctttat 64220  T
Q  174 ggtggct 180  Q
    |||||||    
T  64221 ggtggct 64227  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 17615 - 17707
Alignment:
Q  143 cttttagataaagtaaaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccct 235  Q
    |||||||| ||||| |||||| |||| || |||||||| || ||||| |||  ||  |||||||| |  |||||||| |||||||||||||||    
T  17615 cttttagagaaagttaaattttattcgttatggtggcttaaggctaagaacgttatttttgtgtacggtactcagagttggtggtcggaccct 17707  T

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