View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_66 (Length: 247)
Name: NF0552_low_66
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34966003 - 34965763
Alignment:
| Q |
1 |
cttatggaagaatcacatctaaccaaggttaccactttatggtttagaaattattcttcgcagcactcaaacatggatgctttgtactgtttgtagtact |
100 |
Q |
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| T |
34966003 |
cttatggaagaatcacatctaaccaaggttaccactttatggtttagaaattattcttcgcagcactcaaacatggatgctttgtactgtttgtagtact |
34965904 |
T |
|
| Q |
101 |
tgctacagttattttcttttctcattggctaccataattttcaatctggttttctctccctctaaggaggctagaatgagacattcagtctctagataca |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34965903 |
tgctacagtttttttcttttctcattggctaccataattttcaatctggttttctctccctctaaggaggctagaatgagaaattcagtctctagataca |
34965804 |
T |
|
| Q |
201 |
agtatactactgccaaatttgttagtgagacttcatctcac |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
34965803 |
agtatactactgccaaatttgttagtgagacttcatttcac |
34965763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 18424002 - 18423779
Alignment:
| Q |
1 |
cttatggaagaatcacatctaaccaaggttaccactttatggtttagaaattattcttcgcagcactcaaacatggatgctttgtactgtttgtagtact |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | |||| | |||| |||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
18424002 |
cttatggaagaaagacatctaaccaaggttaccaatgtatgatatagatattattcttctaagcactcaaacatggatgctttgtact---------act |
18423912 |
T |
|
| Q |
101 |
tgctacagttattttcttttctcattggctaccataattttcaatctggttttctctccctctaaggaggctagaatgagacattcagtctctagataca |
200 |
Q |
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|||| ||| | |||||||| ||| | || |||||||||||| |||||||| |||||| || |||||| |||||| |||||||| ||||||||||||| |
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| T |
18423911 |
tgcttcagct-ttttctttcctcgtcggttaccataattttgaatctggtgttctcttgctttaaggaagctagagtgagacatctagtctctagatact |
18423813 |
T |
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| Q |
201 |
agtatactactgccaaatttgttagtgagacttca |
235 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||| |
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| T |
18423812 |
agtatac-actgtcaaatttgttggtgagacttca |
18423779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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