View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_68 (Length: 229)
Name: NF0552_low_68
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11732716 - 11732516
Alignment:
| Q |
1 |
tagaggaagaggaatctactttaggttcactgctcttttctgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtg |
100 |
Q |
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| T |
11732716 |
tagaggaagaggaatctactttaggttcactgctcttttctgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtg |
11732617 |
T |
|
| Q |
101 |
atcaattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggcattgaagcgaatcgagccatttagagaaggtgcggccattg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11732616 |
atcgattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggcattgaagcgaatcgagccatttagataaggtgcggccattg |
11732517 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
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|
| T |
11732516 |
t |
11732516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 11828853 - 11828729
Alignment:
| Q |
60 |
tccaacctccgaagatggagagccttgagatttggaaggtgatcaattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggc |
159 |
Q |
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||||| |||||||| |||||| ||||||||| |||||| | ||| ||||| || ||||||| |||||| ||||||||| ||||||||||||||||||||| |
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| T |
11828853 |
tccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattcaaggtaaacttaacaaggc |
11828754 |
T |
|
| Q |
160 |
attgaagcgaatcgagccatttaga |
184 |
Q |
| |
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||||||| ||| ||||||| ||||| |
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| T |
11828753 |
attgaagtgaagcgagccagttaga |
11828729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 11861006 - 11860861
Alignment:
| Q |
39 |
tctgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcaattggcggtagaaatttgcatttaggacagtcac |
138 |
Q |
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||||||||||||| | ||| ||||| |||||||| |||||| ||||||||| |||||| ||||| ||||| || ||||||||||| || |||||||| |
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| T |
11861006 |
tctgcaatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgt |
11860907 |
T |
|
| Q |
139 |
tcaaggtaaacttaacaaggcattgaagcgaatcgagccatttaga |
184 |
Q |
| |
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|||||||||| ||| ||||| ||||||| ||| ||||||| ||||| |
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| T |
11860906 |
tcaaggtaaatttaccaaggaattgaagtgaagcgagccaattaga |
11860861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 12039777 - 12039612
Alignment:
| Q |
36 |
ttttctgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcaattggcggtagaaatttgcatttaggacagt |
135 |
Q |
| |
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|||| ||||||||||| || || |||||||| ||||| |||||| ||||||||| |||||| | ||| |||||||| ||||||| |||||| || |||| |
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| T |
12039777 |
ttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattttgggcagt |
12039678 |
T |
|
| Q |
136 |
cactcaaggtaaacttaacaaggcattgaagcgaatcgagccatttagagaaggtgcggccattgt |
201 |
Q |
| |
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|| ||||||||||||||||||| || ||||| ||| ||| ||| | ||| |||||| | ||||||| |
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|
| T |
12039677 |
cattcaaggtaaacttaacaagacaatgaagtgaaccgaaccagtcagacaaggtgtgaccattgt |
12039612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 11901524 - 11901679
Alignment:
| Q |
36 |
ttttctgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcaattggcggtagaaatttgcatttaggacagt |
135 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||| |||||| ||||||||| |||||| ||||| ||||| || ||||| | |||||| ||||||| |
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| T |
11901524 |
ttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagt |
11901623 |
T |
|
| Q |
136 |
cactcaaggtaaacttaacaaggcattgaagcgaatcgagccatttagagaaggtg |
191 |
Q |
| |
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| ||||||||||||||||||| || || | |||| |||||| ||||| |||||| |
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| T |
11901624 |
cgttcaaggtaaacttaacaagacactggatggaatggagccagttagacaaggtg |
11901679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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