View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_low_7 (Length: 656)
Name: NF0552_low_7
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 79 - 656
Target Start/End: Original strand, 36319790 - 36320367
Alignment:
| Q |
79 |
acaagtaataatgttacatcaaagttgttgatgacaagggagttaaagttgcataaacactcctcaacactgtcaataaaaaacccacaaaacatgttgg |
178 |
Q |
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| T |
36319790 |
acaagtaataatggtacatcaaagttgttgatgacaagggagttaaagttgcataaacactcctcaacactgtcaataaaaaacccacaaaacatgttgg |
36319889 |
T |
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| Q |
179 |
aatgctagagcagcaccaaagaatgcaaccaatatcacagttacagttaaccgagttcctttgatttgtaaaagtattgcaagtatcgcatattatcatg |
278 |
Q |
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| T |
36319890 |
aatgctagagcagcaccaaagaatgcaaccaatatcacagttacagttaaccgagttcctttgatttgtaaaaatattgcaagtatcacatattatcatg |
36319989 |
T |
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| Q |
279 |
aaaaaggaaacatagcaccatacaaagagaagggaccctttaaaaattatttagcataatcatggaaccagttaccaccttagttctagaaacaagcagc |
378 |
Q |
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| T |
36319990 |
aaaaaggaaacatagcaccatacaaagagaagtgaccctttaaaaattatttagcataatcatggaaccagttaccaccttagttctagaaacaagcaac |
36320089 |
T |
|
| Q |
379 |
accaagctgtatgtataagcaattgcttcgtaatttgcaggcatattttcaggagaggtagactgtgcccaaattgatgatactaatcggcttatctgat |
478 |
Q |
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| T |
36320090 |
accaagctgtatgtataagcaattgcttcgtaatttgcaggcatattttcaggagaggtagactgtgcccaaattgatgatactaatcggcttatctgat |
36320189 |
T |
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| Q |
479 |
gcctactcagctttagggtaacaacctcctgttctcaagtgaaaataagaccataaataatattaaccatgataacatccaattcaagctaatgaaaaaa |
578 |
Q |
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| T |
36320190 |
gcctactcagctttagggtgacaacctcctgttctcaagtgaaaataagaccataaataatattaaccatgataacatccaattcaagctaatgaaaaaa |
36320289 |
T |
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| Q |
579 |
cagaacactggttagaatggagttgaagtgttcaagcataataacattatatctgtagtgtatactcaaatgaaagac |
656 |
Q |
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| T |
36320290 |
cagaacactggttagaatggagttgaagtgttcaagcataataacattatatctgtagtgtatactcaaatgaaagac |
36320367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 489
Target Start/End: Complemental strand, 13973132 - 13973027
Alignment:
| Q |
384 |
gctgtatgtataagcaattgcttcgtaatttgcaggcatattttcaggagaggtagactgtgcccaaattgatgatactaatcggcttatctgatgccta |
483 |
Q |
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|||||| |||| ||||||||||||| ||||| |||| |||| |||| || |||||||| ||||||||||||||| || || | |||||||| ||| |
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| T |
13973132 |
gctgtaggtatgagcaattgcttcgaaattttcaggtgtattcaaaggatagatagactgtacccaaattgatgatagcaaaagggtaatctgatgacta |
13973033 |
T |
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| Q |
484 |
ctcagc |
489 |
Q |
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|||||| |
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| T |
13973032 |
ctcagc |
13973027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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