View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0552_low_70 (Length: 214)

Name: NF0552_low_70
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0552_low_70
NF0552_low_70
[»] chr6 (3 HSPs)
chr6 (65-175)||(14789331-14789441)
chr6 (41-103)||(29518722-29518784)
chr6 (47-92)||(10074251-10074296)
[»] chr7 (4 HSPs)
chr7 (54-141)||(45697751-45697838)
chr7 (47-92)||(37532899-37532944)
chr7 (47-91)||(37533253-37533297)
chr7 (49-88)||(28300470-28300509)
[»] chr2 (3 HSPs)
chr2 (46-88)||(7598452-7598494)
chr2 (55-104)||(29676761-29676810)
chr2 (99-151)||(28531534-28531586)
[»] chr3 (1 HSPs)
chr3 (47-92)||(22303842-22303887)
[»] chr5 (1 HSPs)
chr5 (46-150)||(13785832-13785936)
[»] chr1 (5 HSPs)
chr1 (49-92)||(11977173-11977216)
chr1 (56-104)||(26661774-26661822)
chr1 (45-81)||(22077394-22077430)
chr1 (45-88)||(34649661-34649705)
chr1 (60-104)||(48588738-48588782)
[»] scaffold0078 (1 HSPs)
scaffold0078 (54-104)||(5213-5263)
[»] chr8 (2 HSPs)
chr8 (45-104)||(1014121-1014179)
chr8 (110-150)||(45122898-45122938)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 14789441 - 14789331
Alignment:
Q  65 aagcagcaacgacggtaaaagcagcaaggggttccttgtgtcagttccgttacagagaaaacaacaacgacgatacaagcaagtaattgtatgcaagtaa 164  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789441 aagcagcaacgacggtaaaagcagcaagtggctccttgtgtcggttccattgcagagaaaacaacaacgacgatacaagcaagtaattgtatgcaagtaa 14789342  T
Q  165 ttggatagaaa 175  Q
    |||||||||||    
T  14789341 ttggatagaaa 14789331  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 29518722 - 29518784
Alignment:
Q  41 gagacagccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgt 103  Q
    ||||| ||||||  ||||||||||||||||||||||||||| |||||||||| || |||||||    
T  29518722 gagaccgccggttagttgcgcagaaagcagcaacgacggtacaagcagcaagtggctccttgt 29518784  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 10074296 - 10074251
Alignment:
Q  47 gccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaag 92  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  10074296 gccggtcagttgcgcagaaagtagcaacgacggtacaagcagcaag 10074251  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 45697751 - 45697838
Alignment:
Q  54 cgttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtgtcagttccgttacagagaaaacaacaacgacgataca 141  Q
    |||||||||||||||||||||| ||||| ||| |||||| || |||||||||  |||||||| | |||||| || |||||||| ||||    
T  45697751 cgttgcgcagaaagcagcaacggcggtacaagaagcaagtggctccttgtgttggttccgtttcggagaaagcagcaacgacggtaca 45697838  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 37532944 - 37532899
Alignment:
Q  47 gccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaag 92  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  37532944 gccggtcagttgcgcagaaagcagcaacgactgtacaagcagcaag 37532899  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 37533297 - 37533253
Alignment:
Q  47 gccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaa 91  Q
    ||||||| |||||| |||||||||||||||||||| |||||||||    
T  37533297 gccggtcagttgcgtagaaagcagcaacgacggtacaagcagcaa 37533253  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 28300509 - 28300470
Alignment:
Q  49 cggtccgttgcgcagaaagcagcaacgacggtaaaagcag 88  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  28300509 cggtccattgcgcagaaagcagcaacgacggtacaagcag 28300470  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 7598452 - 7598494
Alignment:
Q  46 agccggtccgttgcgcagaaagcagcaacgacggtaaaagcag 88  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  7598452 agccggtccgttgcgcagaaagcagcaacgacggtacaagcag 7598494  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 29676761 - 29676810
Alignment:
Q  55 gttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtg 104  Q
    ||||||||||||||| ||||||| ||| |||||||||| || ||||||||    
T  29676761 gttgcgcagaaagcaacaacgacagtacaagcagcaagtggctccttgtg 29676810  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 28531586 - 28531534
Alignment:
Q  99 cttgtgtcagttccgttacagagaaaacaacaacgacgatacaagcaagtaat 151  Q
    ||||||||||| |  |||  |||||| ||||||||||||||||||||||||||    
T  28531586 cttgtgtcagtccgtttatggagaaagcaacaacgacgatacaagcaagtaat 28531534  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 22303887 - 22303842
Alignment:
Q  47 gccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaag 92  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22303887 gccggtcagttgcgcagaaagcagcaacgacggtacaagcagcaag 22303842  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 13785936 - 13785832
Alignment:
Q  46 agccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtgtcagttccgttacagagaaaacaacaacgacgatacaagca 145  Q
    |||||||| |||||||||||| || ||||||||||| | | |||||| || || ||||| | |||||||| | |||||| || ||||  |||||||||||    
T  13785936 agccggtctgttgcgcagaaaacaacaacgacggtacatgtagcaagtggctctttgtgccggttccgttgcggagaaagcagcaacaccgatacaagca 13785837  T
Q  146 agtaa 150  Q
    |||||    
T  13785836 agtaa 13785832  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 11977173 - 11977216
Alignment:
Q  49 cggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaag 92  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||    
T  11977173 cggtcagttgcgcagaaagcagcaacgacggtacaagcagcaag 11977216  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 26661822 - 26661774
Alignment:
Q  56 ttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtg 104  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||||||    
T  26661822 ttgcgcagaaagcagcaacgacggtacaagcaacaagtggctccttgtg 26661774  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 22077430 - 22077394
Alignment:
Q  45 cagccggtccgttgcgcagaaagcagcaacgacggta 81  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  22077430 cagccggtccgttgcggagaaaccagcaacgacggta 22077394  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 34649661 - 34649705
Alignment:
Q  45 cagccggtccgtt-gcgcagaaagcagcaacgacggtaaaagcag 88  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||||    
T  34649661 cagccggtccgtttgcgcagaaagcaacaacgacggtacaagcag 34649705  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 48588782 - 48588738
Alignment:
Q  60 gcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtg 104  Q
    ||||||||| |||||||||||| |||||||||| || ||||||||    
T  48588782 gcagaaagctgcaacgacggtacaagcagcaagtggctccttgtg 48588738  T

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Target: scaffold0078 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 5213 - 5263
Alignment:
Q  54 cgttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtg 104  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||||||||    
T  5213 cgttgcgcagaaagcagcaacggcggtacaagcagcaagtggctccttgtg 5263  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 1014179 - 1014121
Alignment:
Q  45 cagccggtccgttgcgcagaaagcagcaacgacggtaaaagcagcaaggggttccttgtg 104  Q
    ||||||||| |||||||||||||| |||||| ||||| |||||||||| || ||||||||    
T  1014179 cagccggtc-gttgcgcagaaagccgcaacggcggtacaagcagcaagtggctccttgtg 1014121  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 45122898 - 45122938
Alignment:
Q  110 tccgttacagagaaaacaacaacgacgatacaagcaagtaa 150  Q
    |||||| |||||||| || ||||||||||||||||||||||    
T  45122898 tccgttgcagagaaaccagcaacgacgatacaagcaagtaa 45122938  T

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