View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0553_high_10 (Length: 348)
Name: NF0553_high_10
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 17718624 - 17718962
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaagcaacccattacgtcctatttcttattcttatactatctgaaatatatttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17718624 |
cttgatggttgattcttgaattccatagcatcttaaatatgttttctaagcaacccattacgtcctatttcttattcttatactatctgaaatatatttt |
17718723 |
T |
|
| Q |
101 |
gtttgacattttttatataagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatgaaaagttatttattctgaaaattc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17718724 |
gtttgacattttttatattagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatgaaaagttatttattctgaaaattc |
17718823 |
T |
|
| Q |
201 |
att-agctattaacatttgttatattgtcatttacgtacatgatgtgattaggtgcaatcaagtcgttgcatcaaattttataatcaagttgttgcatca |
299 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17718824 |
attaagctattaacatttgttatatggtcatttacgtacatgatgtgactaggtgcattcaagtcgttgcatcaaattttataatcaagttgttgcatca |
17718923 |
T |
|
| Q |
300 |
aatttttcattgaaatttagatgatagtgtatacctatg |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17718924 |
aatttttcattgaaatttagatgatagtgtatacctatg |
17718962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 16730666 - 16730920
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaagcaacccatta---------------cgtcctatttcttattcttatacta |
85 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
16730666 |
cttgatggttgattgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaataaccaacctatttcttattcttatacta |
16730765 |
T |
|
| Q |
86 |
tctgaaatatattttgtttgacattttttatataagttcattatctgcatagttttataactgttcaca-tagaaaatttac-----ttaattgatg-aa |
178 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||| |||||| | |||||||||||| || ||||||| || |
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| T |
16730766 |
tctgaaatatagtttgtttgacaatttttatattaattcattatctgcatagttttataattgttcatattagaaaatttactttaatttattgatgaaa |
16730865 |
T |
|
| Q |
179 |
aagttatttattctgaaaattcattagctattaacatttgttatattgtcattta |
233 |
Q |
| |
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|| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
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| T |
16730866 |
aaattatttattctgaaaattcactagctagtaacatttgttatatggtcattta |
16730920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 17708800 - 17709054
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaagcaacccatta---------------cgtcctatttcttattcttatacta |
85 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
17708800 |
cttgatggttgattgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaataaccaacctatttcttattcttatacta |
17708899 |
T |
|
| Q |
86 |
tctgaaatatattttgtttgacattttttatataagttcattatctgcatagttttataactgttcaca-tagaaaatttac-----ttaattgatg-aa |
178 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||| |||||| | |||||||||||| || ||||||| || |
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|
| T |
17708900 |
tctgaaatatagtttgtttgacaatttttatattaattcattatctgcatagttttataattgttcatattagaaaatttactttaatttattgatgaaa |
17708999 |
T |
|
| Q |
179 |
aagttatttattctgaaaattcattagctattaacatttgttatattgtcattta |
233 |
Q |
| |
|
|| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
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| T |
17709000 |
aaattatttattctgaaaattcactagctagtaacatttgttatatggtcattta |
17709054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 17737124 - 17737288
Alignment:
| Q |
57 |
attacgtcctatttcttattcttatactatctgaaatatattttgtttgacattttttatataagttcattatctgcatagttttataactgttcaca-t |
155 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||| | | |
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|
| T |
17737124 |
attatgtcctattccatattcgtatactatctgaaatatattttgtttgacaatttttctattagttcattatctgcatagttttataactg-tcatatt |
17737222 |
T |
|
| Q |
156 |
agaaaatttacttaattgatg-aaaagttatttattctgaaaattcattagctattaacatttgtt |
220 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||| |||||||||| || ||| ||||| ||||| |
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|
| T |
17737223 |
agaaaatttactttatagatgaaaaagttatttattttgaaaattcactaactagtaacagttgtt |
17737288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 17736575 - 17736722
Alignment:
| Q |
88 |
tgaaatatattttgtttgacattttttatataagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatg-aaaagttatt |
186 |
Q |
| |
|
||||||| ||||||||| || ||||||||| ||| |||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||| |
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| T |
17736575 |
tgaaatacattttgtttcgcaatttttatattggttaattatctgcatagttttataactgttcatatttgaaatttactttattgatgaaaaagttatt |
17736674 |
T |
|
| Q |
187 |
tattctgaaaattcattagctattaacatttgttatattgtcatttac |
234 |
Q |
| |
|
||| |||||||||| |||||| ||||| |||||||| ||||||||| |
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|
| T |
17736675 |
tatcgtgaaaattcactagctagtaacaactgttatatggtcatttac |
17736722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 16722798 - 16722945
Alignment:
| Q |
88 |
tgaaatatattttgtttgacattttttatataagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatg-aaaagttatt |
186 |
Q |
| |
|
||||||| ||||||||| || ||||||||| || ||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||| |
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| T |
16722798 |
tgaaatacattttgtttcgcaatttttatattggtctattatctgcatagttttataactattcatatttgaaatttactttattgatgaaaaagttatt |
16722897 |
T |
|
| Q |
187 |
tattctgaaaattcattagctattaacatttgttatattgtcatttac |
234 |
Q |
| |
|
||| |||||||||| |||||| ||||| |||||||| ||||||||| |
|
|
| T |
16722898 |
tatcatgaaaattcactagctagtaacaactgttatatggtcatttac |
16722945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 17699812 - 17699959
Alignment:
| Q |
88 |
tgaaatatattttgtttgacattttttatataagttcattatctgcatagttttataactgttcacatagaaaatttacttaattgatg-aaaagttatt |
186 |
Q |
| |
|
||||||| ||||||||| || ||||||||| || ||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||| |
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| T |
17699812 |
tgaaatacattttgtttcgcaatttttatattggtctattatctgcatagttttataactattcatatttgaaatttactttattgatgaaaaagttatt |
17699911 |
T |
|
| Q |
187 |
tattctgaaaattcattagctattaacatttgttatattgtcatttac |
234 |
Q |
| |
|
||| |||||||||| |||||| ||||| |||||||| ||||||||| |
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|
| T |
17699912 |
tatcatgaaaattcactagctagtaacagctgttatatggtcatttac |
17699959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17737037 - 17737095
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaagcaacccatt |
59 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17737037 |
cttgatggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatt |
17737095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17736454 - 17736512
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaagcaacccatt |
59 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
17736454 |
cttgatggttgattgttgaattccatagtatctcaaatatgttttctaaataacccatt |
17736512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16722677 - 16722725
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaa |
49 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
16722677 |
cttgatggttaattgttgaattccatagtatctcaaatatgttttctaa |
16722725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17699691 - 17699739
Alignment:
| Q |
1 |
cttgatggttgattcttgaattccatagtatcttaaatatgttttctaa |
49 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
17699691 |
cttgatggttaattgttgaattccatagtatctcaaatatgttttctaa |
17699739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 17714264 - 17714309
Alignment:
| Q |
73 |
tattcttatactatctgaaatatattttgtttgacattttttatat |
118 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
17714264 |
tattcttatactatctcaaatttattttgtttaacattttttatat |
17714309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 17714503 - 17714545
Alignment:
| Q |
282 |
aatcaagttgttgcatcaaatttttcattgaaatttagatgata |
325 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
17714503 |
aatcaagttgttgcatcaaattttccattg-aatttagatgata |
17714545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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