View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_high_19 (Length: 252)
Name: NF0553_high_19
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 2067072 - 2067191
Alignment:
| Q |
9 |
aaaataaattttactaacaaaggaagagaccagagaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgcgtaacacatactaag |
108 |
Q |
| |
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|||| |||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2067072 |
aaaagaaattttagtaacaaaacaagagacctgacaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgctagacacatactaag |
2067171 |
T |
|
| Q |
109 |
tgattcttatagtaaatgaa |
128 |
Q |
| |
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| |||||||||||||||||| |
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| T |
2067172 |
taattcttatagtaaatgaa |
2067191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2127151 - 2127280
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacaccattgtat--tttaatattttgaactgaatgttttggatgaaatgcgtaac |
98 |
Q |
| |
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|||| ||||||| |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
2127151 |
aatacaggaaaagaaattttagtaacaaagcaagagacctgacaaacaccattgtatattttaatattttgaactgaatgttttggatgaaatgctagac |
2127250 |
T |
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| Q |
99 |
acatactaagtgattcttatagtaaatgaa |
128 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
2127251 |
acatagtaagtgattcttatagtaaatgaa |
2127280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2099891 - 2100018
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgcgtaacac |
100 |
Q |
| |
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|||| ||||||| |||||||| ||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
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| T |
2099891 |
aatacaggaaaagaaattttagtaacaaaacaagagacctgacaaacaccattgtattttaatattttgaagtgaatgttttggatgaaaagctagacac |
2099990 |
T |
|
| Q |
101 |
atactaagtgattcttatagtaaatgaa |
128 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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|
| T |
2099991 |
atgctaagtgattcttatagtaaatgaa |
2100018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2074164 - 2074300
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacaccattgtattttaatattttgaac---------tgaatgttttggatgaaat |
91 |
Q |
| |
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||||||| |||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2074164 |
aataaagaaaaagaaattttactaacaaaacaagagacctgacaaacaccattgtattttaatattttgaactgaataaagtgaatgttttggatgaaat |
2074263 |
T |
|
| Q |
92 |
gcgtaacacatactaagtgattcttatagtaaatgaa |
128 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |
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| T |
2074264 |
gctagacacatactaagtgattcttatagtaaatgaa |
2074300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2058792 - 2058924
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacacca---ttgtattttaatattttgaactgaatgttttggatgaaatgcgtaa |
97 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||||||| |||||||| |||||| |||||||||||| ||||| |||||| ||||||||| | |
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| T |
2058792 |
aataaaggaaaagaaattttacaaacaaaacaagagaccagacaaacaccaatattgtatcttaatattttgagctgaaagttttgaatgaaatgctaga |
2058891 |
T |
|
| Q |
98 |
cacatactaagtgattcttatagtaaatgaatg |
130 |
Q |
| |
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||||||||||||| ||||||||| ||| ||||| |
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| T |
2058892 |
cacatactaagtggttcttatagcaaaggaatg |
2058924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 2244590 - 2244505
Alignment:
| Q |
45 |
aacaccattgtattttaatattttgaactgaatgttttggatgaaatgcgta-acacatactaagtgattcttatagtaaatgaatg |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||| |||| ||||| |
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| T |
2244590 |
aacaccattgtattttaatattttgaactcaatgttttggatgaaatg-gtagacacatactaagtggttcttatactaaaggaatg |
2244505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2139757 - 2139849
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgc |
93 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
2139757 |
aataaaggaaaagaaattttacaaacaaaacttgagaccatacaaacaccattgtatttgaatattttgaactgtgtgttttggatgaaatgc |
2139849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2690788 - 2690671
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgcgtaacac |
100 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||| ||| | ||||| |||| |||||||||| |||| |
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| T |
2690788 |
aataaaggaaaagaaattttactaacaaaacaagagaccagacaaacaccattgtatcttaatactttaatctgaaaatttt-gatgaaatgctagacac |
2690690 |
T |
|
| Q |
101 |
atactaagtgattcttata |
119 |
Q |
| |
|
||||| ||| |||||||| |
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|
| T |
2690689 |
gtactaggtggttcttata |
2690671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2115249 - 2115301
Alignment:
| Q |
1 |
aataaaggaaaataaattttactaacaaaggaagagaccagagaaacaccatt |
53 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||| || |||||||||| |
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|
| T |
2115249 |
aataaaggaaaagaaattttagtaacaaaacaagagacctgacaaacaccatt |
2115301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 2136528 - 2136616
Alignment:
| Q |
5 |
aaggaaaataaattttactaacaaaggaagagaccagagaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgc |
93 |
Q |
| |
|
|||||||| ||| |||| |||||| | ||||||| | |||||||||||||||| ||||||||||| | | ||||||||||||||| |
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|
| T |
2136528 |
aaggaaaaaaaaaattacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggtcttttggatgaaatgc |
2136616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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