View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_high_2 (Length: 440)
Name: NF0553_high_2
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 55074266 - 55074694
Alignment:
| Q |
1 |
tgaatttctcaacctgcatgtagtgttggctagtgtcttaaaattacagggcttccccatgtggtcctgcctaattaatacaaaaattgtaatcggacaa |
100 |
Q |
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| T |
55074266 |
tgaatttctcaacctgcatgtagtgttggctagtgtcttaaaattgcagggcttccccatgtggtcctgcctaattaatacaaaaattgtaatcggacaa |
55074365 |
T |
|
| Q |
101 |
acatctacatctcatgtgtataccactatattggtcttaccttgtcttcgtcttgcttctttttaccatgtttccaagccacataaaattatctttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55074366 |
acatctacatctcatgtgtataccactatattggtcttaccttgccttcgtcttgcttctttttaccatgtttccaagccacataaaattatctttcaaa |
55074465 |
T |
|
| Q |
201 |
attaattaaatatccgtatacggccatgtcctgaannnnnnngtgatccgtctttatgtgtgtttttcttaatgccaaacaatacactacagtactacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55074466 |
attaattaaatatccgtatacggccatgtcctgaa-ttttttgtgatccgtctttatgtgtgtttttcttaatgccaaacaatacactacagtactacta |
55074564 |
T |
|
| Q |
301 |
atgaatcctaacacccaagctaaattaatgccgtgataannnnnnngtgtataatggagacaatgatatttgaatctgtgtaacttctacgcatattact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55074565 |
atgaatcctaacacccaagctaaattaatgccgtgataatttttttgtgtataatggagacaatgatatttgaatctgtgtaacttctacgcatattact |
55074664 |
T |
|
| Q |
401 |
taaacctctcatagcttttctaattctgtg |
430 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
55074665 |
taaacctctcatagcttttctaattctgtg |
55074694 |
T |
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