View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0553_high_21 (Length: 250)
Name: NF0553_high_21
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6393706 - 6393465
Alignment:
| Q |
1 |
ttaattgctaattcatatttgttctctctaaagagaaactgctaataaattttaattttttatctgatgagtaagaggacttctatttggccatacaatt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6393706 |
ttaattgctgattcatatttgttctctctaaagagaaactgctaataaattttaattttttatctgatgagtaagaggacttctatttggccatacaatt |
6393607 |
T |
|
| Q |
101 |
tggattcttatgataagtaagaggactatattttggacttccactccattttctttaccatacatgtgtagcgccgctacaaaagcaaatagtactgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
6393606 |
tggattcttatgataagtaagaggactatacttgggacttccactccattttctttaccaaacgtgtgtagcatcgctacgaaagcaaattgtactgtga |
6393507 |
T |
|
| Q |
201 |
tatccctttgtgaaggggtagcaacgggtgatactctctgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
6393506 |
tatccctttgtgaaggggtagcaacgggatatactccctgct |
6393465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1491 times since January 2019
Visitors: 3669