View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_high_22 (Length: 248)
Name: NF0553_high_22
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 30414551 - 30414318
Alignment:
| Q |
3 |
ccttgtaacacatggcgccaaatcgcaagaggaataataacaatcaccaaggattttcacatcaaatactcgtgaccttggttaaattatatttggtcta |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30414551 |
ccttgtaacacatggcgccaaatcgcaagaggaataataacaatcaccaaggattttcacatcaaatactcgtgaccttggttaaattatatttggtcta |
30414452 |
T |
|
| Q |
103 |
gtagctttgtactaaagcaaggtgtacatcgcacgacattgatagttggttcattgtgcattggtccttggaaatgtttaaaacttcatggacaacaaat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30414451 |
gtagctttgtactaaagcaaggtgtacatcgcacgacattgatagttggttcattgtgcattggtccttggaaatgtttaaaacttcatcgacaacaaat |
30414352 |
T |
|
| Q |
203 |
cannnnnnnnngggaagtagaaactcacaaccct |
236 |
Q |
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|| |||||||||||||||||||||| |
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| T |
30414351 |
cattttttttttggaagtagaaactcacaaccct |
30414318 |
T |
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