View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_1 (Length: 646)

Name: NF0553_low_1
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_1
NF0553_low_1
[»] chr7 (4 HSPs)
chr7 (140-626)||(46597205-46597691)
chr7 (494-633)||(41145514-41145653)
chr7 (494-633)||(43896240-43896379)
chr7 (494-633)||(12352918-12353057)
[»] chr5 (1 HSPs)
chr5 (494-633)||(23149029-23149168)
[»] chr4 (2 HSPs)
chr4 (494-633)||(32497306-32497445)
chr4 (458-559)||(29015977-29016078)
[»] chr8 (3 HSPs)
chr8 (384-626)||(9182920-9183162)
chr8 (384-626)||(11625111-11625353)
chr8 (118-183)||(9183363-9183428)
[»] chr6 (4 HSPs)
chr6 (384-626)||(10161143-10161385)
chr6 (92-171)||(16860599-16860678)
chr6 (521-564)||(21740958-21741001)
chr6 (332-440)||(16860839-16860947)
[»] chr3 (1 HSPs)
chr3 (521-564)||(51142343-51142386)


Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 140 - 626
Target Start/End: Original strand, 46597205 - 46597691
Alignment:
Q  140 ggaccggatggtctgaatcctgctttttaccaccgtttttggaaggaattaggtggagaaatattttatgttgcttcctcttggctcacttctagttcct 239  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  46597205 ggaccggatggtctgaattctgctttttaccaccgtttttggaaggaattaggtggagaaatattttttgttgcttcctcttggctcacttctggttcct 46597304  T
Q  240 ttccccctgagttgaatgccacacacatcgtgctcgctccaaaggatgattacccggaatatatgaaagaccttcgccctatctccctctttaatatcct 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  46597305 ttccccctgagttgaatgccacacacatcgtgctcgctccaaagggtgataacccggaatatatgaaagaccttcgccctatctccctctgtaatgtcct 46597404  T
Q  340 atacaaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatc 439  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46597405 atataaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatc 46597504  T
Q  440 atggacaatgcactcacgactttcgaagttctacactacatgaaatgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaag 539  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46597505 atggacaatgcaatcacggctttcgaagttctacactgcatgaaatgcaagcgcaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaag 46597604  T
Q  540 cttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtttttctcctcaatggatctcttggatgatgatgt 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46597605 cttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtttttctcctcaatggatctcttggatgatgatgt 46597691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 633
Target Start/End: Original strand, 41145514 - 41145653
Alignment:
Q  494 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 593  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  41145514 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 41145613  T
Q  594 t-ttctcctcaatggatctcttggatgatgatgtccatctc 633  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  41145614 tctgctcc-caatggatcacatggatgatgatgtgcatctc 41145653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 633
Target Start/End: Original strand, 43896240 - 43896379
Alignment:
Q  494 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 593  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  43896240 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 43896339  T
Q  594 t-ttctcctcaatggatctcttggatgatgatgtccatctc 633  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  43896340 tctgctcc-caatggatcacatggatgatgatgtgcatctc 43896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 494 - 633
Target Start/End: Complemental strand, 12353057 - 12352918
Alignment:
Q  494 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 593  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  12353057 aaaggaaaagaaggagatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 12352958  T
Q  594 t-ttctcctcaatggatctcttggatgatgatgtccatctc 633  Q
    | | |||| ||||||| | | ||||||||||||| ||||||    
T  12352957 tctgctcc-caatggaacacatggatgatgatgtgcatctc 12352918  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 494 - 633
Target Start/End: Original strand, 23149029 - 23149168
Alignment:
Q  494 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 593  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  23149029 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgatagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 23149128  T
Q  594 t-ttctcctcaatggatctcttggatgatgatgtccatctc 633  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  23149129 tctgctcc-caatggatcacatggatgatgatgtgcatctc 23149168  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 633
Target Start/End: Original strand, 32497306 - 32497445
Alignment:
Q  494 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 593  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  32497306 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 32497405  T
Q  594 t-ttctcctcaatggatctcttggatgatgatgtccatctc 633  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  32497406 tctgctcc-caatggatcacatggatgatgatgtgcatctc 32497445  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 559
Target Start/End: Original strand, 29015977 - 29016078
Alignment:
Q  458 actttcgaagttctacactacatgaaatgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagtt 557  Q
    ||||| ||| ||||||| |  ||||||||||| || || || |||| ||||||  | ||||| ||||| |||||||||||||| |||||||| |||| ||    
T  29015977 acttttgaaattctacattttatgaaatgcaaacataagggtaaaaaaggtgaggtggctctaaaacttgatatttcaaaagcctttgatagcgtcaatt 29016076  T
Q  558 gg 559  Q
    ||    
T  29016077 gg 29016078  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 626
Target Start/End: Complemental strand, 9183162 - 9182920
Alignment:
Q  384 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 483  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| ||||||| || |||      
T  9183162 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcg 9183063  T
Q  484 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 583  Q
     |||||| | |||||||||  ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  9183062 ctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 9182963  T
Q  584 aagttgggtttttctcctcaatggatctcttggatgatgatgt 626  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  9182962 aaactgggattttgtcaccaatggatcacttggatgatgatgt 9182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 626
Target Start/End: Original strand, 11625111 - 11625353
Alignment:
Q  384 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 483  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| | ||||| || |||      
T  11625111 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcg 11625210  T
Q  484 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 583  Q
     |||||| | |||||||||| ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  11625211 ctgcaagaataaaggaaaaaaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 11625310  T
Q  584 aagttgggtttttctcctcaatggatctcttggatgatgatgt 626  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  11625311 aaactgggattttgtcaccaatggatcacttggatgatgatgt 11625353  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 9183428 - 9183363
Alignment:
Q  118 tatgcatcctgataaatcccccggaccggatggtctgaatcctgctttttaccaccgtttttggaa 183  Q
    ||||||||| |||||||| || ||||| || ||||| ||||||||||||| |||||| || |||||    
T  9183428 tatgcatccagataaatcacctggacctgacggtcttaatcctgcttttttccaccgattctggaa 9183363  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 626
Target Start/End: Complemental strand, 10161385 - 10161143
Alignment:
Q  384 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 483  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| ||||||| || |||      
T  10161385 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcg 10161286  T
Q  484 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 583  Q
     |||||| | |||||||||  ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  10161285 ctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 10161186  T
Q  584 aagttgggtttttctcctcaatggatctcttggatgatgatgt 626  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  10161185 aaactgggattttgtcaccaatggatcacttggatgatgatgt 10161143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 16860599 - 16860678
Alignment:
Q  92 caagaatttcatgaagcaatatttaatatgcatcctgataaatcccccggaccggatggtctgaatcctgctttttacca 171  Q
    ||||||||| | || ||||| |||| ||||||||| |||||||| || || ||||||||||| ||||| || ||||||||    
T  16860599 caagaatttaaagaggcaatttttagtatgcatccggataaatctccgggtccggatggtctaaatccagcattttacca 16860678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 564
Target Start/End: Complemental strand, 21741001 - 21740958
Alignment:
Q  521 aaactcgatatttcaaaagcttttgatagtgtcagttggtccta 564  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||    
T  21741001 aaacttgatatattaaaagcttttgatagtgtcagttggtccta 21740958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 440
Target Start/End: Original strand, 16860839 - 16860947
Alignment:
Q  332 aatatcctatacaaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctc 431  Q
    |||||| ||||||||||||| || ||||| || || ||||| ||||| || ||||||  |||||||||||||  |||||| || || ||| |||  ||||    
T  16860839 aatatcttatacaaaattatctcgaaggtccttgccaaccgtcttcgtccgttgattagtaaatggatatctttagaacaggcggcttttattcactctc 16860938  T
Q  432 gttctatca 440  Q
    |||| ||||    
T  16860939 gttccatca 16860947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 521 - 564
Target Start/End: Complemental strand, 51142386 - 51142343
Alignment:
Q  521 aaactcgatatttcaaaagcttttgatagtgtcagttggtccta 564  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  51142386 aaacttgatatatcaaaagcttttgatagtgtcagttggtccta 51142343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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