View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_10 (Length: 386)

Name: NF0553_low_10
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_10
NF0553_low_10
[»] chr1 (6 HSPs)
chr1 (30-170)||(40158157-40158297)
chr1 (238-372)||(40158367-40158501)
chr1 (291-328)||(26307082-26307119)
chr1 (282-327)||(14332421-14332466)
chr1 (283-320)||(50195467-50195504)
chr1 (283-327)||(31667438-31667482)
[»] chr7 (2 HSPs)
chr7 (250-327)||(37775995-37776072)
chr7 (283-327)||(10893871-10893915)
[»] chr8 (5 HSPs)
chr8 (283-327)||(31681832-31681876)
chr8 (283-328)||(31548295-31548340)
chr8 (245-277)||(14223094-14223126)
chr8 (287-327)||(16994053-16994093)
chr8 (283-327)||(32691756-32691800)
[»] chr6 (6 HSPs)
chr6 (276-327)||(10335371-10335422)
chr6 (285-327)||(10157997-10158039)
chr6 (276-322)||(34057972-34058018)
chr6 (279-327)||(663782-663830)
chr6 (244-280)||(18263568-18263604)
chr6 (288-328)||(18803259-18803299)
[»] chr4 (4 HSPs)
chr4 (287-327)||(683065-683105)
chr4 (288-328)||(9988706-9988746)
chr4 (282-326)||(37496718-37496762)
chr4 (282-322)||(53622587-53622627)
[»] chr3 (2 HSPs)
chr3 (275-327)||(23271988-23272040)
chr3 (276-322)||(1502592-1502638)
[»] chr2 (3 HSPs)
chr2 (275-326)||(24067764-24067815)
chr2 (278-327)||(44605136-44605185)
chr2 (283-327)||(18622428-18622472)
[»] chr5 (1 HSPs)
chr5 (245-281)||(28136286-28136322)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 40158157 - 40158297
Alignment:
Q  30 aagaagactcgtcatctaattttctcttgtaattacaaccttgttcagaaccaacagttttatccatttcttcagccattataatacccttgtctatcac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40158157 aagaagactcgtcatctaattttctcttgtaattacaaccttgttcagaaccaacagttttatccatttcttcagccattataatacccttgtctatcac 40158256  T
Q  130 ctccatctacaaataaaccacaaaagggtcaaatcagtgat 170  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40158257 ctccatctacaaataaaccacaaaagggtcagatcagtgat 40158297  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 40158367 - 40158501
Alignment:
Q  238 tgggagcctctatagcaccgacacttctgatcgaatacgtgtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaatactagtcgat 337  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40158367 tgggagcctctatagcaccgacacttctgatcaaatacgtgtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaatactagtcgat 40158466  T
Q  338 gtgtgagtgtcatggtcggtgttcgtgtctatgtc 372  Q
    |||||||||||||||||||||||||||||||||||    
T  40158467 gtgtgagtgtcatggtcggtgttcgtgtctatgtc 40158501  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 26307082 - 26307119
Alignment:
Q  291 acatgtgatttcattcatttatgtcattttctcaaata 328  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  26307082 acatgtgatttcattcaattatgtcattttctcaaata 26307119  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 14332466 - 14332421
Alignment:
Q  282 aacaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||| |||||||| |||| | |||||||||||||||||||    
T  14332466 aacaccgacatatgtgattacattgaattatgtcattttctcaaat 14332421  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 50195467 - 50195504
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcatttt 320  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  50195467 acaccgacacatgtgattacattcaattatgtcatttt 50195504  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 31667482 - 31667438
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||||||||||| |||| | |||||||||||||| ||||    
T  31667482 acaccgacacatgtgattacatttaattatgtcattttctaaaat 31667438  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 37776072 - 37775995
Alignment:
Q  250 tagcaccgacacttctgatcgaatacgtgtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    ||||||| |||||| |||  ||| |||||||| |||| ||||||||||||| |||| | |||||||||||||||||||    
T  37776072 tagcacctacacttttgacagaagacgtgtcttacactgacacatgtgattacatttaattatgtcattttctcaaat 37775995  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 10893871 - 10893915
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    ||||| |||||||||||| |||||| |||||||||||||| ||||    
T  10893871 acaccaacacatgtgattacattcaattatgtcattttcttaaat 10893915  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 31681832 - 31681876
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||    
T  31681832 acaccgacacatgtgatttcattcaattatgtcattttcttaaat 31681876  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 31548295 - 31548340
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcattttctcaaata 328  Q
    |||||||||||||||||| |||| | |||||||||||| |||||||    
T  31548295 acaccgacacatgtgattacattgaattatgtcattttatcaaata 31548340  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 14223126 - 14223094
Alignment:
Q  245 ctctatagcaccgacacttctgatcgaatacgt 277  Q
    ||||||||||||||||||||||||| |||||||    
T  14223126 ctctatagcaccgacacttctgatcaaatacgt 14223094  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 16994093 - 16994053
Alignment:
Q  287 cgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  16994093 cgacacatgtgattacattcaattctgtcattttctcaaat 16994053  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 32691800 - 32691756
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||| ||||||||||||| |||||| |||||||||||||| ||||    
T  32691800 acactgacacatgtgattacattcaattatgtcattttcttaaat 32691756  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 10335371 - 10335422
Alignment:
Q  276 gtgtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    ||||| ||||||||||||| ||||| |||||| |||||||||||||||||||    
T  10335371 gtgtcgaacaccgacacatctgattacattcaattatgtcattttctcaaat 10335422  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 10158039 - 10157997
Alignment:
Q  285 accgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaat 10157997  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 34058018 - 34057972
Alignment:
Q  276 gtgtctaacaccgacacatgtgatttcattcatttatgtcattttct 322  Q
    |||||| |||||||||||||||||| || ||| ||||||||||||||    
T  34058018 gtgtctgacaccgacacatgtgattacagtcaattatgtcattttct 34057972  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 663782 - 663830
Alignment:
Q  279 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  663782 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 663830  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 18263604 - 18263568
Alignment:
Q  244 cctctatagcaccgacacttctgatcgaatacgtgtc 280  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  18263604 cctctgtagcaccgacacttctgatcgaagacgtgtc 18263568  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 18803299 - 18803259
Alignment:
Q  288 gacacatgtgatttcattcatttatgtcattttctcaaata 328  Q
    ||||||||||||| |||||| |||||| |||||||||||||    
T  18803299 gacacatgtgattacattcaattatgtaattttctcaaata 18803259  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 683105 - 683065
Alignment:
Q  287 cgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcattttctcaaat 683065  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 9988706 - 9988746
Alignment:
Q  288 gacacatgtgatttcattcatttatgtcattttctcaaata 328  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcattttctcaaata 9988746  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 37496762 - 37496718
Alignment:
Q  282 aacaccgacacatgtgatttcattcatttatgtcattttctcaaa 326  Q
    ||||||||||| ||||||| |||| | ||||||||||||||||||    
T  37496762 aacaccgacacttgtgattacattgaattatgtcattttctcaaa 37496718  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 53622627 - 53622587
Alignment:
Q  282 aacaccgacacatgtgatttcattcatttatgtcattttct 322  Q
    ||||||||||||||||||| ||||||  |||||||||||||    
T  53622627 aacaccgacacatgtgattgcattcaagtatgtcattttct 53622587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 23271988 - 23272040
Alignment:
Q  275 cgtgtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||| ||||||||||||| ||||| |||||| |||||||| ||||||||||    
T  23271988 cgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaat 23272040  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 1502638 - 1502592
Alignment:
Q  276 gtgtctaacaccgacacatgtgatttcattcatttatgtcattttct 322  Q
    ||||| ||||| ||||||||||||| |||||| ||||||||||||||    
T  1502638 gtgtccaacacagacacatgtgattacattcaattatgtcattttct 1502592  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 24067815 - 24067764
Alignment:
Q  275 cgtgtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaa 326  Q
    ||||||| |||||||||| |||||||||||| | ||||| ||||||||||||    
T  24067815 cgtgtctgacaccgacacttgtgatttcatttaattatgacattttctcaaa 24067764  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 44605136 - 44605185
Alignment:
Q  278 gtctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    ||||||||||||||||||| ||| |||| | |||||| ||||||||||||    
T  44605136 gtctaacaccgacacatgtaattacattgaattatgttattttctcaaat 44605185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 18622472 - 18622428
Alignment:
Q  283 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 327  Q
    |||||||||||||||||| |||| | |||||||||||||| ||||    
T  18622472 acaccgacacatgtgattgcatttaattatgtcattttcttaaat 18622428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 28136322 - 28136286
Alignment:
Q  245 ctctatagcaccgacacttctgatcgaatacgtgtct 281  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  28136322 ctctatagcactgacacttctgatcgaagacgtgtct 28136286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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