View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_11 (Length: 384)

Name: NF0553_low_11
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_11
NF0553_low_11
[»] chr1 (38 HSPs)
chr1 (40-197)||(38791631-38791788)
chr1 (263-310)||(38791860-38791907)
chr1 (25-102)||(10336541-10336618)
chr1 (48-112)||(31734303-31734367)
chr1 (40-100)||(33498860-33498920)
chr1 (40-102)||(32896-32958)
chr1 (40-102)||(16263570-16263632)
chr1 (30-104)||(19195389-19195458)
chr1 (43-108)||(30927751-30927816)
chr1 (25-102)||(46929744-46929821)
chr1 (30-94)||(10422821-10422885)
chr1 (30-102)||(14254279-14254351)
chr1 (43-105)||(17092501-17092563)
chr1 (28-94)||(17642013-17642079)
chr1 (57-102)||(12744561-12744606)
chr1 (57-102)||(12755551-12755596)
chr1 (25-94)||(32142852-32142921)
chr1 (25-94)||(32150928-32150997)
chr1 (52-105)||(49078136-49078189)
chr1 (30-102)||(10172982-10173054)
chr1 (43-94)||(12036768-12036819)
chr1 (43-94)||(45726457-45726508)
chr1 (30-88)||(5504070-5504128)
chr1 (52-102)||(5855547-5855597)
chr1 (48-94)||(8764024-8764070)
chr1 (48-102)||(10507723-10507777)
chr1 (48-94)||(26325845-26325891)
chr1 (43-101)||(33418139-33418197)
chr1 (40-94)||(34697368-34697422)
chr1 (48-94)||(35908791-35908837)
chr1 (48-94)||(42710167-42710213)
chr1 (48-102)||(43959850-43959904)
chr1 (49-102)||(44969689-44969742)
chr1 (30-94)||(4581693-4581757)
chr1 (52-104)||(14357778-14357830)
chr1 (49-105)||(17988690-17988746)
chr1 (57-105)||(28324618-28324666)
chr1 (57-105)||(33004053-33004101)
[»] chr4 (35 HSPs)
chr4 (25-105)||(38075459-38075539)
chr4 (28-105)||(5472856-5472933)
chr4 (30-102)||(4738647-4738719)
chr4 (52-102)||(53599089-53599139)
chr4 (37-102)||(20354666-20354731)
chr4 (49-94)||(26479978-26480023)
chr4 (30-99)||(43458645-43458714)
chr4 (25-94)||(46108728-46108797)
chr4 (30-102)||(7246656-7246728)
chr4 (30-102)||(17080072-17080144)
chr4 (30-102)||(21192669-21192741)
chr4 (43-108)||(31588707-31588774)
chr4 (30-102)||(40780871-40780943)
chr4 (30-102)||(42722587-42722659)
chr4 (30-105)||(36145225-36145300)
chr4 (48-94)||(1446863-1446909)
chr4 (48-94)||(29895824-29895870)
chr4 (49-94)||(20421810-20421855)
chr4 (30-102)||(2559336-2559408)
chr4 (30-94)||(8889059-8889123)
chr4 (62-102)||(20532451-20532491)
chr4 (30-102)||(38166056-38166128)
chr4 (43-102)||(16450329-16450388)
chr4 (30-105)||(28944958-28945032)
chr4 (25-108)||(30317256-30317339)
chr4 (43-102)||(49260688-49260747)
chr4 (43-93)||(6779249-6779299)
chr4 (48-90)||(8064826-8064868)
chr4 (28-90)||(14859332-14859394)
chr4 (57-99)||(15839972-15840014)
chr4 (63-105)||(24166476-24166518)
chr4 (48-102)||(43468376-43468430)
chr4 (53-102)||(8424583-8424632)
chr4 (25-102)||(52950111-52950188)
chr4 (30-94)||(14597910-14597974)
[»] chr3 (32 HSPs)
chr3 (30-102)||(33251686-33251758)
chr3 (30-105)||(47219165-47219240)
chr3 (30-100)||(23511593-23511663)
chr3 (48-105)||(8362598-8362655)
chr3 (29-102)||(30045845-30045918)
chr3 (51-102)||(3755594-3755645)
chr3 (48-94)||(49198383-49198429)
chr3 (40-94)||(53649759-53649813)
chr3 (52-102)||(54261250-54261300)
chr3 (57-102)||(6462436-6462481)
chr3 (48-105)||(25294981-25295038)
chr3 (25-94)||(35315988-35316057)
chr3 (25-94)||(47471863-47471932)
chr3 (30-102)||(35923634-35923706)
chr3 (48-99)||(34662348-34662399)
chr3 (30-105)||(45877475-45877550)
chr3 (43-94)||(47749129-47749180)
chr3 (35-102)||(52364816-52364883)
chr3 (36-94)||(26043844-26043902)
chr3 (48-94)||(29135945-29135991)
chr3 (48-102)||(39849095-39849149)
chr3 (48-90)||(49021232-49021274)
chr3 (48-94)||(54237480-54237526)
chr3 (57-110)||(3507571-3507624)
chr3 (25-94)||(29127951-29128020)
chr3 (25-110)||(45402357-45402442)
chr3 (53-102)||(55069713-55069762)
chr3 (30-94)||(7328876-7328939)
chr3 (62-102)||(10040580-10040620)
chr3 (30-102)||(22909807-22909879)
chr3 (48-104)||(37319918-37319974)
chr3 (30-94)||(40660338-40660402)
[»] chr2 (34 HSPs)
chr2 (30-102)||(37560197-37560269)
chr2 (48-110)||(9360776-9360838)
chr2 (25-102)||(42770656-42770733)
chr2 (31-105)||(3848925-3848999)
chr2 (28-102)||(13104833-13104907)
chr2 (52-102)||(41220659-41220709)
chr2 (30-91)||(2550903-2550964)
chr2 (29-102)||(10026625-10026698)
chr2 (30-94)||(6358161-6358225)
chr2 (30-102)||(10669616-10669688)
chr2 (30-102)||(25540414-25540486)
chr2 (43-102)||(3643910-3643969)
chr2 (43-102)||(13026434-13026493)
chr2 (43-94)||(22593166-22593217)
chr2 (43-102)||(38962787-38962846)
chr2 (53-108)||(45263700-45263755)
chr2 (30-95)||(21641981-21642046)
chr2 (49-102)||(24179592-24179645)
chr2 (28-105)||(28525463-28525540)
chr2 (39-99)||(19976826-19976886)
chr2 (30-102)||(20116622-20116694)
chr2 (43-94)||(8410163-8410214)
chr2 (51-90)||(14169640-14169679)
chr2 (43-102)||(38005426-38005485)
chr2 (52-102)||(7747298-7747348)
chr2 (48-102)||(10823084-10823138)
chr2 (48-102)||(11069902-11069956)
chr2 (57-103)||(29653650-29653696)
chr2 (40-102)||(34722704-34722766)
chr2 (30-103)||(5035311-5035384)
chr2 (29-89)||(10046486-10046546)
chr2 (57-105)||(12455331-12455379)
chr2 (30-94)||(34356238-34356302)
chr2 (30-94)||(39201518-39201582)
[»] chr5 (31 HSPs)
chr5 (35-102)||(24875370-24875437)
chr5 (40-102)||(11845821-11845883)
chr5 (48-105)||(42861246-42861303)
chr5 (30-102)||(9805029-9805101)
chr5 (30-102)||(40117440-40117512)
chr5 (35-102)||(12081933-12082000)
chr5 (48-94)||(1538464-1538510)
chr5 (30-99)||(14588627-14588696)
chr5 (48-112)||(30349594-30349658)
chr5 (30-102)||(42086352-42086424)
chr5 (31-102)||(9168264-9168335)
chr5 (47-102)||(20590024-20590079)
chr5 (28-90)||(20255406-20255468)
chr5 (48-102)||(20682645-20682699)
chr5 (28-102)||(23383682-23383756)
chr5 (48-102)||(41163488-41163542)
chr5 (40-102)||(42291525-42291587)
chr5 (30-102)||(24463896-24463968)
chr5 (30-90)||(35813008-35813068)
chr5 (43-94)||(14974347-14974398)
chr5 (48-91)||(20525874-20525917)
chr5 (52-94)||(19572757-19572799)
chr5 (53-94)||(13664293-13664334)
chr5 (57-102)||(38897756-38897801)
chr5 (30-102)||(3653924-3653996)
chr5 (30-110)||(8513536-8513616)
chr5 (30-102)||(14152075-14152147)
chr5 (57-101)||(14728109-14728153)
chr5 (62-94)||(28857161-28857193)
chr5 (30-94)||(39099789-39099853)
chr5 (43-99)||(43399156-43399212)
[»] chr8 (18 HSPs)
chr8 (43-105)||(8141127-8141189)
chr8 (25-102)||(26570952-26571029)
chr8 (25-102)||(43027333-43027410)
chr8 (30-102)||(4479306-4479378)
chr8 (30-102)||(18374038-18374110)
chr8 (52-102)||(1013009-1013059)
chr8 (48-94)||(2467146-2467192)
chr8 (28-90)||(10535412-10535474)
chr8 (52-102)||(10927634-10927684)
chr8 (30-99)||(3692864-3692933)
chr8 (30-102)||(6100500-6100572)
chr8 (30-102)||(23895596-23895668)
chr8 (40-102)||(583840-583902)
chr8 (43-108)||(22958792-22958857)
chr8 (29-94)||(25848212-25848277)
chr8 (31-108)||(35496266-35496343)
chr8 (62-102)||(8586981-8587021)
chr8 (40-112)||(24938582-24938654)
[»] scaffold0316 (1 HSPs)
scaffold0316 (30-102)||(1624-1696)
[»] chr7 (23 HSPs)
chr7 (30-102)||(29805450-29805522)
chr7 (30-105)||(1797484-1797559)
chr7 (40-105)||(3353448-3353513)
chr7 (30-102)||(38578877-38578949)
chr7 (35-99)||(41945503-41945567)
chr7 (40-102)||(19914723-19914785)
chr7 (52-102)||(37514948-37514998)
chr7 (40-102)||(39420864-39420926)
chr7 (48-94)||(48804718-48804764)
chr7 (25-102)||(17748387-17748464)
chr7 (25-102)||(42032123-42032200)
chr7 (54-103)||(42210296-42210345)
chr7 (57-102)||(43862009-43862054)
chr7 (30-102)||(39474967-39475039)
chr7 (31-102)||(4228765-4228836)
chr7 (43-89)||(3603397-3603443)
chr7 (48-94)||(10047904-10047950)
chr7 (28-102)||(16802150-16802224)
chr7 (57-94)||(13095893-13095930)
chr7 (49-90)||(22573851-22573892)
chr7 (48-88)||(24983447-24983487)
chr7 (30-94)||(27875098-27875162)
chr7 (30-102)||(34659253-34659325)
[»] chr6 (19 HSPs)
chr6 (30-105)||(8888907-8888982)
chr6 (43-102)||(29333162-29333221)
chr6 (40-102)||(2271323-2271385)
chr6 (30-94)||(5253233-5253297)
chr6 (57-112)||(29444802-29444857)
chr6 (52-102)||(21898676-21898726)
chr6 (30-94)||(8932697-8932761)
chr6 (30-90)||(8938751-8938811)
chr6 (30-94)||(8944163-8944227)
chr6 (30-102)||(9633635-9633707)
chr6 (38-102)||(12606458-12606522)
chr6 (30-94)||(13036014-13036078)
chr6 (30-102)||(34954629-34954701)
chr6 (25-102)||(3587950-3588027)
chr6 (69-102)||(10311518-10311551)
chr6 (30-102)||(3601112-3601184)
chr6 (65-105)||(11142628-11142668)
chr6 (30-94)||(13391322-13391386)
chr6 (30-102)||(30788863-30788935)
[»] scaffold0001 (1 HSPs)
scaffold0001 (41-102)||(65173-65234)
[»] scaffold0086 (1 HSPs)
scaffold0086 (30-102)||(26210-26282)
[»] scaffold0170 (1 HSPs)
scaffold0170 (43-102)||(9872-9931)
[»] scaffold0016 (1 HSPs)
scaffold0016 (28-102)||(8709-8783)
[»] scaffold0384 (1 HSPs)
scaffold0384 (48-101)||(6000-6053)
[»] scaffold0209 (1 HSPs)
scaffold0209 (40-102)||(12600-12662)
[»] scaffold0004 (1 HSPs)
scaffold0004 (48-106)||(95009-95067)
[»] scaffold0291 (1 HSPs)
scaffold0291 (57-94)||(6890-6927)
[»] scaffold0002 (1 HSPs)
scaffold0002 (43-112)||(319439-319508)
[»] scaffold0005 (2 HSPs)
scaffold0005 (30-94)||(219404-219468)
scaffold0005 (62-102)||(271116-271156)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 38791631 - 38791788
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctagaactattacagcactatttagtatttaga 139  Q
    |||||||  ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  38791631 catcaaagatggacgactaattcggctcatgcgtagaggcatgcgcacttgccaatcgttgtttcccctagaactattatagcactatttagtatttaga 38791730  T
Q  140 taagaatcaacattgctttgcattatgtagcagtagtacaaaatatacagcacagatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38791731 taagaatcaacattgctttgcattatgtagcagtagtacaaaatatacagcacagatt 38791788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 38791860 - 38791907
Alignment:
Q  263 tgaacattattttctctaggtccacgaaagtaaccctttcattttcat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38791860 tgaacattattttctctaggtccacgaaagtaaccctttcattttcat 38791907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 10336618 - 10336541
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||||||||  ||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||    
T  10336618 catcggttttcgatccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgtt 10336541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 31734367 - 31734303
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctagaa 112  Q
    |||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||    
T  31734367 gtggacgattaatttggctcgtacgtagaggcatgcgcactggccaatcgttgtttcccctagaa 31734303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 33498860 - 33498920
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttg 100  Q
    ||||||| |||||||| |||| |||||||||||||||| |||||||||||||||| |||||    
T  33498860 catcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttg 33498920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 32958 - 32896
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||| ||||| ||||||||||||||||||||| |||| |||||| |||| |||||||    
T  32958 catcaaaagtagacgactaattcggctcatgcgtagaggcatgtgcactgaccaagcgttgtt 32896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 16263632 - 16263570
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||||||| || | ||||| |||||||||| |||||||||||||||| |||||||    
T  16263632 catcaaaagtggacgactattccggcttatgcgtagaggcatgcgcactggccaagcgttgtt 16263570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 19195458 - 19195389
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttc 104  Q
    |||| |||||||||||| |||||||||     |||||||||||||||| |||||||||||||||| |||||||||    
T  19195458 gtttccgactcatcaaaggtggacgat-----cggctcatgcgtagaggcatgcgcactggccaaacgttgtttc 19195389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 30927751 - 30927816
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctct 108  Q
    ||||||||||||| |||| |||||||||||||||| ||||| || ||||||| ||||||| |||||    
T  30927751 caaaagtggacgactaatccggctcatgcgtagaggcatgcacattggccaagcgttgttccctct 30927816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 46929744 - 46929821
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||||||||  |||||||||||||||| |||| ||||||||| || ||| |||||||| ||||||| |||||||    
T  46929744 catcggttttcgatccatcaaaagtggacgactaatccggctcatgtgtggaggcatgcgcattggccaagcgttgtt 46929821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 10422885 - 10422821
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| ||||| | |||| |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  10422885 gtttccgacttaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 10422821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 14254279 - 14254351
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||||||| |||||||| |||| ||||||||||||| || |||||| ||||||||| |||||||    
T  14254279 gtttccgacccatcaaaggtggacgactaatccggctcatgcgtaaaggcatgcgtactggccaagcgttgtt 14254351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 17092501 - 17092563
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||||||| |||| |||||| ||||||||| ||| | |||||||||||||||||||||    
T  17092501 caaaggtggacgactaatccggctcgtgcgtagaggcatacacactggccaatcgttgtttcc 17092563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 17642013 - 17642079
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||| |||| || |||| |||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  17642013 cagtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaa 17642079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 12744561 - 12744606
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||    
T  12744561 taattcggctcatgcgtagagacatgcgcactagtcaagcgttgtt 12744606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 12755551 - 12755596
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||    
T  12755551 taattcggctcatgcgtagagacatgcgcactagtcaagcgttgtt 12755596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 32142852 - 32142921
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| |||| ||||||| |||  ||| |||||||||||||||||| || ||||||||||||||||    
T  32142852 catcggtttccgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactggccaa 32142921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 32150928 - 32150997
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| ||||||||| ||||||| |||  ||| |||||||||||||||||| || ||||||||||| ||||    
T  32150928 catcggttttcgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactgaccaa 32150997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 49078189 - 49078136
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||| |||||||||||||||| ||||||||||||||||  |||||||||    
T  49078189 acgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcc 49078136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 10172982 - 10173054
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||| ||| |||| |||||||||||||||| |||| ||||||||||| |||||||    
T  10172982 gtttccgacccaccaaaggtgggcgagtaatccggctcatgcgtagaggcatgggcactggccaagcgttgtt 10173054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 12036768 - 12036819
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  12036768 caaaggtggacgattaatctggctcgtgcgtagaggcatgcgcactggccaa 12036819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 45726457 - 45726508
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| ||| |||| |||| |||||||||||||||||||| ||||||||||||    
T  45726457 caaaggtgaacgactaatccggctcatgcgtagagacatacgcactggccaa 45726508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 5504128 - 5504070
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcact 88  Q
    |||| |||| ||||||| |||||||| |||| |||||||||||||||| |||| |||||    
T  5504128 gtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgtgcact 5504070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 5855597 - 5855547
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || ||||||||||||| |||||||||||||||| |||||||    
T  5855597 acgactaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgtt 5855547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 8764070 - 8764024
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  8764070 gtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaa 8764024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 10507777 - 10507723
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||| |||| ||||||||||||||||  |||| |||||||||| |||||||    
T  10507777 gtggacgactaatccggctcatgcgtagaggtatgcacactggccaaacgttgtt 10507723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 26325891 - 26325845
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  26325891 gtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaa 26325845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 33418139 - 33418197
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgt 101  Q
    |||| |||||||| |||| |||||| ||| ||||| |||||||||||||||| ||||||    
T  33418139 caaaggtggacgactaatccggctcgtgcatagaggcatgcgcactggccaagcgttgt 33418197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 34697422 - 34697368
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||||||| ||| |||| |||||||||||||||| ||||| |||| |||||    
T  34697422 catcaaaagtgggcgactaatccggctcatgcgtagaggcatgcacactagccaa 34697368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 35908837 - 35908791
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  35908837 gtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaa 35908791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 42710167 - 42710213
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||||||| | |||||||||| ||||||||||||||||    
T  42710167 gtggacgactaattcggtttatgcgtagaggcatgcgcactggccaa 42710213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 43959850 - 43959904
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  43959850 gtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 43959904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 44969742 - 44969689
Alignment:
Q  49 tggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| |||||||||||||| | ||||| |||||||||| |||||||    
T  44969742 tggacgactaatccggctcatgcgtaggggcatgcacactggccaagcgttgtt 44969689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 4581693 - 4581757
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| || |||| |||||||| || | |||||| ||||||||| ||||||||||||||||    
T  4581693 gtttccgacccaccaaaggtggacgactattccggctcgtgcgtagaggcatgcgcactggccaa 4581757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 14357830 - 14357778
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttc 104  Q
    ||||||||| ||| || ||||||||| |||||||||||| ||| |||||||||    
T  14357830 acgattaatccggttcgtgcgtagaggcatgcgcactggtcaaacgttgtttc 14357778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 17988690 - 17988746
Alignment:
Q  49 tggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||| |||| ||| ||||||||||||  ||||||||||||||| | ||||||||    
T  17988690 tggacgactaatccggttcatgcgtagaggtatgcgcactggccaagcattgtttcc 17988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 28324618 - 28324666
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||||||||||||||| ||||||||||| ||||  |||||||||    
T  28324618 taatccggctcatgcgtagaggcatgcgcactgaccaagtgttgtttcc 28324666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 33004053 - 33004101
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||||| ||||||||| |||||||||||||||| | ||||||||    
T  33004053 taatccggctcgtgcgtagaggcatgcgcactggccaagcattgtttcc 33004101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 38075539 - 38075459
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||| |||| || |||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  38075539 catcggtttccgacccaccaaaggtggacaattaattcggctcatgcgtagaggcatgcgcactggccaagcgttgtttcc 38075459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 5472856 - 5472933
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||||||| || |||| |||| ||| |||| |||||| ||||||||| |||||||||||||||| ||||||||||    
T  5472856 cagttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcc 5472933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 4738719 - 4738647
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||||| |||||||||||||||||||||||||||| || |||||||    
T  4738719 gtttccgacccaccaaaggtggacgactaattcagctcatgcgtagagacatgcgcactggcaaagcgttgtt 4738647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 53599139 - 53599089
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  53599139 acgattaatccggctcatgcgtagaggcatgcgcactggccaaacgttgtt 53599089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 20354731 - 20354666
Alignment:
Q  37 actcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||||||||| |||| || ||||||||||||| |||||||||| ||||| |||||||    
T  20354731 actcatcaatagtggacgactaatccgactcatgcgtagaggcatgcgcactagccaagcgttgtt 20354666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 26479978 - 26480023
Alignment:
Q  49 tggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  26479978 tggacgattaattcggctcatgcgtagaggcatgcgtactggccaa 26480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 43458714 - 43458645
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    |||| |||||||||||| |||||||| |||| |||||| | ||||||| |||||||||||||||| ||||    
T  43458714 gtttccgactcatcaaaggtggacgactaatccggctcgtccgtagaggcatgcgcactggccaagcgtt 43458645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 46108797 - 46108728
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| |||| |||||||||||||||| ||||  ||||||||||||||| |||||||||| |||||    
T  46108797 catcggtttccgacccatcaaaagtggacgactaatctggctcatgcgtagaggcatgcgcactagccaa 46108728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 7246656 - 7246728
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||| ||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  7246656 gtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 7246728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 17080144 - 17080072
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||  ||||||| |||  ||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  17080144 gttttcgatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 17080072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 21192741 - 21192669
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||| |||| |||| |||||||| || ||| ||||||||| |||||||||||||| | |||||||    
T  21192741 gttttcgactcaccaaatgtgggcgattaatccgactcgtgcgtagaggcatgcgcactggcccaacgttgtt 21192669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 31588774 - 31588707
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggcca--atcgttgtttcctct 108  Q
    ||||||||  ||| |||| ||||||||||||||||||||||||||||||||  | |||||||||||||    
T  31588774 caaaagtgagcgactaatccggctcatgcgtagagacatgcgcactggccaagagcgttgtttcctct 31588707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 40780871 - 40780943
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| |||||||||||||||| ||||||||||| |||| |||||||    
T  40780871 gtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgtt 40780943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 42722587 - 42722659
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||  ||| ||| |||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  42722587 gttttcgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 42722659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 36145225 - 36145300
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| ||| |||||||| |||||||| |||| ||||||||| |||||| |||||||||||  ||| ||||||||||    
T  36145225 gtttccgattcatcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttcc 36145300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 1446909 - 1446863
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  1446909 gtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 1446863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 29895870 - 29895824
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  29895870 gtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 29895824  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 20421855 - 20421810
Alignment:
Q  49 tggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||    
T  20421855 tggacgattaatctggctcatgcgtagaggcatgcgcactggccaa 20421810  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 2559408 - 2559336
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| |||||  ||||||||| |||||||||||||||| |||||||    
T  2559408 gtttccgacccaccaaaggtggacgagtaatccggcttgtgcgtagaggcatgcgcactggccaagcgttgtt 2559336  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 8889123 - 8889059
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| || |||| |||||||| |||| |||||||||||||||| ||||||||||| ||||    
T  8889123 gtttccgacccaccaaaggtggacgactaatccggctcatgcgtagagccatgcgcactgcccaa 8889059  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 20532451 - 20532491
Alignment:
Q  62 cggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  20532451 cggctcatgcgtagaggcatgcgcactggccaagcgttgtt 20532491  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 38166128 - 38166056
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||| ||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  38166128 gtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgtt 38166056  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 16450388 - 16450329
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||| ||||  ||||||||||||||| |||| ||||||||||| |||||||    
T  16450388 caaaggtggacgactaatctggctcatgcgtagaggcatgtgcactggccaagcgttgtt 16450329  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 28945032 - 28944958
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||||||| |||| |||  ||||||| |||| || |||||||||||||||||| ||||||| ||| ||||||||||    
T  28945032 gttttcgattcattaaagatggacgactaatccgactcatgcgtagagacatgtgcactggtcaa-cgttgtttcc 28944958  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 30317339 - 30317256
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctct 108  Q
    |||| |||| |||| || |||| |||| ||| ||||||||||| ||||||||| ||| || ||||||||| ||||||| |||||    
T  30317339 catcggtttccgacccaccaaaggtgggcgactaattcggctcgtgcgtagaggcattcgtactggccaagcgttgttccctct 30317256  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 49260688 - 49260747
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  49260688 caaaggtggtcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 49260747  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 6779299 - 6779249
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggcca 93  Q
    |||| |||||||| |||| |||||||||| ||||| |||||||||||||||    
T  6779299 caaaggtggacgactaatccggctcatgcatagaggcatgcgcactggcca 6779249  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 8064826 - 8064868
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||||||| |||| |||||||||||||||| ||||||||||||    
T  8064826 gtggacgactaatccggctcatgcgtagaggcatgcgcactgg 8064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 14859394 - 14859332
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||||| |||| ||||||| ||||| || ||||  ||||| ||||||||||||||||||||||    
T  14859394 cagtttccgacacatcaaaggtggatgactaatctggctcgtgcgtagagacatgcgcactgg 14859332  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 15839972 - 15840014
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    |||| |||||||||||||||| |||||||||||||||| ||||    
T  15839972 taatccggctcatgcgtagaggcatgcgcactggccaaacgtt 15840014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 24166518 - 24166476
Alignment:
Q  63 ggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  24166518 ggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcc 24166476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 43468430 - 43468376
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||| |||| ||||||||||||||||| ||| ||||||||||| |||||||    
T  43468430 gtgggcgactaatccggctcatgcgtagagaaatgtgcactggccaagcgttgtt 43468376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 8424632 - 8424583
Alignment:
Q  53 cgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||||| ||| ||||| |||||||||||||||| |||||||    
T  8424632 cgattaatttggctcgtgcatagaggcatgcgcactggccaaacgttgtt 8424583  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 52950188 - 52950111
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||| || |||| |||||||| ||||  || ||||| |||||| |||||||||||||||| |||||||    
T  52950188 catcggtttccgacccaccaaaggtggacgactaatctggttcatgtgtagagtcatgcgcactggccaagcgttgtt 52950111  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 14597910 - 14597974
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||  ||||||| |||||||| |||| | | || ||||||||| ||||||||||||||||    
T  14597910 gttttcgatccatcaaaggtggacgactaatccagttcgtgcgtagaggcatgcgcactggccaa 14597974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 33251758 - 33251686
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| |||||||||| |||||||    
T  33251758 gttttcgacccatcaaatgtggacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgtt 33251686  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 47219240 - 47219165
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||| ||||||| |||||||| |||| |||||||||||||||| |||||||||| ||||| ||||||||||    
T  47219240 gtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcc 47219165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 23511663 - 23511593
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttg 100  Q
    ||||||||| ||||||| ||||||||||||| || ||||||||||||| |||||||||||| ||| |||||    
T  23511663 gttttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaaacgttg 23511593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 8362655 - 8362598
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||||||| ||||| ||||||||||||||| |||||| ||||||||| ||||||||||    
T  8362655 gtggacgactaatttggctcatgcgtagaggcatgcggactggccaaacgttgtttcc 8362598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 30045918 - 30045845
Alignment:
Q  29 agttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||| |||| ||||||| |||||||| ||||  | ||| |||||||||||||||||||||||||| |||||||    
T  30045918 agtttacgacccatcaaaggtggacgactaatcagactcgtgcgtagagacatgcgcactggccaagcgttgtt 30045845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 3755645 - 3755594
Alignment:
Q  51 gacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||| |||| ||||||||||||||||||||||||||||| ||| |||||||    
T  3755645 gacgactaatccggctcatgcgtagagacatgcgcactggtcaaacgttgtt 3755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 49198429 - 49198383
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  49198429 gtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 49198383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 53649813 - 53649759
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||| ||| |||| |||| ||||||||||||||||||| |||||||||||||    
T  53649813 catcaaaggtgaacgactaatccggctcatgcgtagagacaggcgcactggccaa 53649759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 54261300 - 54261250
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  54261300 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 54261250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 6462481 - 6462436
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||    
T  6462481 taatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 6462436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 25295038 - 25294981
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||||||| |||| |||||||||| ||||| ||||||||||||||||  |||||||||    
T  25295038 gtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttcc 25294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 35316057 - 35315988
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| |||| || ||||||||| ||| |||| | |||||||||||||| ||||||||||||||||    
T  35316057 catcggtttccgacccaccaaaagtgggcgactaatccagctcatgcgtagaggcatgcgcactggccaa 35315988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 47471932 - 47471863
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| |||| || |||| |||||||| ||||||||||||||||||||  |||||||||| |||||    
T  47471932 catcggtttccgacccaccaaaggtggacgactaattcggctcatgcgtagaagcatgcgcactagccaa 47471863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 35923634 - 35923706
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||  |||||||  ||||||| ||||||| ||| ||| ||||| |||||||||||||||| |||||||    
T  35923634 gttttcgatccatcaaagatggacgactaattcgactcgtgcttagaggcatgcgcactggccaaacgttgtt 35923706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 34662348 - 34662399
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    |||||||| ||||||||||||||| |||||||||||| |||| |||| ||||    
T  34662348 gtggacgactaattcggctcatgcatagagacatgcgtactgaccaaacgtt 34662399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 45877550 - 45877475
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||| ||||||  ||| |||| |||| |||||||||||||||| |||| |||||||||||  |||||||||    
T  45877550 gtttccgacccatcaatggtgaacgactaatccggctcatgcgtagaggcatgtgcactggccaagtgttgtttcc 45877475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 47749129 - 47749180
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| ||| ||||||||||| ||||||||| ||||||||||||||||    
T  47749129 caaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcactggccaa 47749180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 52364816 - 52364883
Alignment:
Q  35 cgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||||||| || |||||||||| | |||| ||||||||| |||||||||||| ||| |||||||    
T  52364816 cgacccatcaaaggtagacgattaatccagctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 52364883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 26043902 - 26043844
Alignment:
Q  36 gactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||| |||| |||  ||| |||| |||||||||||||||| ||||||||||||||||    
T  26043902 gactcaccaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactggccaa 26043844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 29135991 - 29135945
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||| || |||| |||||||||||||||| ||||||||||||||||    
T  29135991 gtggaagactaatccggctcatgcgtagaggcatgcgcactggccaa 29135945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 39849149 - 39849095
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||| |||| |||||||||||||||| ||||| |||||||||| |||||||    
T  39849149 gtgggcgactaatccggctcatgcgtagaggcatgcacactggccaagcgttgtt 39849095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 49021232 - 49021274
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||||||| |||| |||||||||||||||| ||||||||||||    
T  49021232 gtggacgactaatccggctcatgcgtagaggcatgcgcactgg 49021274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 54237526 - 54237480
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| | || |||||||||||||||||||||||||||| ||||    
T  54237526 gtggacgacttatccggctcatgcgtagagacatgcgcactgaccaa 54237480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 3507571 - 3507624
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctag 110  Q
    |||| |||||| ||||||||| ||||||||||||||||  |||||| |||||||    
T  3507571 taatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccctctag 3507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 29128020 - 29127951
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| |||| || |||| |||| ||| |||| |||||||||||||||| ||||||||||| ||||    
T  29128020 catcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactgaccaa 29127951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 45402357 - 45402442
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctag 110  Q
    ||||||||| |||| ||  ||| ||| |||| |||| |||||||||||||||| ||||||||| |||| |  |||||| |||||||    
T  45402357 catcagtttccgacccactaaaggtgaacgactaatccggctcatgcgtagaggcatgcgcacaggccgagtgttgttccctctag 45402442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 55069713 - 55069762
Alignment:
Q  53 cgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||| |||||| ||||||||| |||| ||||||||||| |||||||    
T  55069713 cgattaatccggctcgtgcgtagaggcatgtgcactggccaaacgttgtt 55069762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 7328939 - 7328876
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||| || |||| |||| ||| |||| ||||||||||||| || ||||||||||||||||    
T  7328939 gttttcgacccaccaaaggtgggcgactaatccggctcatgcgta-aggcatgcgcactggccaa 7328876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 10040620 - 10040580
Alignment:
Q  62 cggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||| ||||||||| |||||||||||||||| |||||||    
T  10040620 cggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 10040580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 22909879 - 22909807
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||||||| ||| |||| ||||||||||||||||||||   ||||||||| ||| | |||||||    
T  22909879 gtttccgacccatcaaaggtgcacgactaattcggctcatgcgtagaagtatgcgcactagcctagcgttgtt 22909807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 37319918 - 37319974
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttc 104  Q
    ||||||||||||||| |||| ||||||||| ||||| |||| | ||| |||||||||    
T  37319918 gtggacgattaattcagctcgtgcgtagaggcatgcacacttgtcaagcgttgtttc 37319974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 40660338 - 40660402
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||| || |||| ||| | ||||||| ||| |||||||||||| ||||||||||| ||||    
T  40660338 gttttcgacccaccaaaggtgaatgattaatccggttcatgcgtagaggcatgcgcactgaccaa 40660402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 37560269 - 37560197
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||||||| ||||||||||||| |||||| ||||||||| ||||||||||| |||| |||||||    
T  37560269 gttttcgacccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcgcactgaccaaacgttgtt 37560197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9360776 - 9360838
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctag 110  Q
    |||| ||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  9360776 gtgggcgactaattcggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcctctag 9360838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 42770656 - 42770733
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||||||||| || |||| ||||||||||||| |||||| |||| |||| |||||||||||||||| |||||||    
T  42770656 catcggttttcgacccaccaaaggtggacgattaatccggctcgtgcgaagaggcatgcgcactggccaagcgttgtt 42770733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 3848925 - 3848999
Alignment:
Q  31 ttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||||||| ||||||| ||| |||| |||| || ||| ||||||||||||||||| |||||||| ||||||||||    
T  3848925 ttttcgacccatcaaaggtgaacgactaatccgactcgtgcgtagagacatgcgccctggccaaacgttgtttcc 3848999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 13104833 - 13104907
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||  |||||| || ||||| |||||  |||||||||||||| |||||||||||||||| |||||||    
T  13104833 cagttttcgacctatcaaaggtagacgactaatttagctcatgcgtagaggcatgcgcactggccaagcgttgtt 13104907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 41220709 - 41220659
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||||||||||||||||||||| |||||||||||||||| |||||||    
T  41220709 acgactaattcggctcatgcgtagaggcatgcgcactggccaagcgttgtt 41220659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 2550964 - 2550903
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggc 91  Q
    |||||| || || ||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  2550964 gttttcaacccaccaaaagtgggcgactaatccggctcatgcgtagagacatgcgcactggc 2550903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 10026625 - 10026698
Alignment:
Q  29 agttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||| |||| || |||| |||| ||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  10026625 agtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgtt 10026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 6358161 - 6358225
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||| || |||  |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  6358161 gttttcgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 6358225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 10669688 - 10669616
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| ||| ||||||||| || ||| |||||||||||||||||||||||||| |||||||    
T  10669688 gtttccgacccaccaaaggtgaacgattaatccgactcgtgcgtagagacatgcgcactggccaagcgttgtt 10669616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 25540414 - 25540486
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  25540414 gtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 25540486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 3643910 - 3643969
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||| |||| | |||||||||||||| |||||||||||||||| |||||||    
T  3643910 caaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttgtt 3643969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 13026434 - 13026493
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||  || |||| |||||||||||||||| |||||||||||||||||| |||||    
T  13026434 caaaagtggctgactaatccggctcatgcgtagaggcatgcgcactggccaatcattgtt 13026493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 22593217 - 22593166
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  22593217 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 22593166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 38962846 - 38962787
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||| |||| ||| |||||||||||| |||||||||||||||| |||||||    
T  38962846 caaaggtggacgactaatccggttcatgcgtagaggcatgcgcactggccaagcgttgtt 38962787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 45263700 - 45263755
Alignment:
Q  53 cgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctct 108  Q
    |||||||| |||||| ||||||||| |||||||||||||||| ||||||| |||||    
T  45263700 cgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccctct 45263755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 21642046 - 21641981
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaat 95  Q
    ||||||||| || |||| | || ||||||||||||||||||||||||| |||||||| | ||||||    
T  21642046 gttttcgacccaccaaaggcgggcgattaattcggctcatgcgtagaggcatgcgcattagccaat 21641981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 24179645 - 24179592
Alignment:
Q  49 tggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| |||||||||||||||| |||| ||||||||||| |||||||    
T  24179645 tggacgactaatccggctcatgcgtagaggcatgtgcactggccaaacgttgtt 24179592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 28525463 - 28525540
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||||| |||| ||| ||| ||||| || |||| |||||| ||||||||| ||||||||||||||||  |||||||||    
T  28525463 cagtttccgacccattaaaggtggatgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtttcc 28525540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 19976826 - 19976886
Alignment:
Q  39 tcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    |||||||| |||| ||| ||||||| || |||||||||||||||||||||| |||| ||||    
T  19976826 tcatcaaaggtgggcgactaattcgacttatgcgtagagacatgcgcactgaccaaacgtt 19976886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 20116622 - 20116694
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||||||| |||||||  |||| |||||||||||||||| |||||||| ||||||  |||||||    
T  20116622 gtttccgacccatcaaaggtggacggctaatccggctcatgcgtagaggcatgcgcattggccatgcgttgtt 20116694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 8410214 - 8410163
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||| ||| |||| |||||| ||||||||| ||||||||||||||||    
T  8410214 caaaagtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaa 8410163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 14169640 - 14169679
Alignment:
Q  51 gacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  14169640 gacgactaatccggctcatgcgtagagacatgcgcactgg 14169679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 38005485 - 38005426
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||| |||| ||||||||| |||||| |||||||||||||||| |||||||    
T  38005485 caaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactggccaagcgttgtt 38005426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 7747348 - 7747298
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||||||||||||||| ||||| |||||||||| |||||||    
T  7747348 acgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgtt 7747298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 10823138 - 10823084
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  10823138 gtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 10823084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 11069956 - 11069902
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||| |||||| |||| |||||||||  ||||||||||||||| |||||||    
T  11069956 gtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgtt 11069902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 29653696 - 29653650
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgttt 103  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||||||||    
T  29653696 taattcggctcgtgcgtagaggcatgcgcactgcccaagcgttgttt 29653650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 34722766 - 34722704
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| ||| |||| |||||| |||||||||||||| |||||| |||| |||||||    
T  34722766 catcaaaggtgggcgactaatccggctcgtgcgtagagacatgtgcactgaccaagcgttgtt 34722704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 5035384 - 5035311
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgttt 103  Q
    |||| |||| ||| ||| ||||| ||||||| ||| || |||||||||||||||||||||| ||| | ||||||    
T  5035384 gtttccgacccattaaaggtggatgattaatccggttcgtgcgtagagacatgcgcactggtcaagcattgttt 5035311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 10046486 - 10046546
Alignment:
Q  29 agttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactg 89  Q
    ||||| |||| || |||| |||| ||| |||| |||||||||||||||| |||||||||||    
T  10046486 agtttccgacccaccaaaggtggtcgactaatccggctcatgcgtagaggcatgcgcactg 10046546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 12455379 - 12455331
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||||| ||||||||| ||||||||||||| || ||||||||||    
T  12455379 taatccggctcgtgcgtagaggcatgcgcactggctaagcgttgtttcc 12455331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 34356302 - 34356238
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| ||||||  ||| ||||||||| |||||||||| ||||| ||||||||||| ||||    
T  34356302 gtttccgacccatcaatggtgcacgattaatccggctcatgcatagaggcatgcgcactgaccaa 34356238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 39201518 - 39201582
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| || |||| ||| |||| |||| |||||||||||||||| ||||| ||||||||||    
T  39201518 gtttccgacccaccaaaggtgaacgactaatccggctcatgcgtagaggcatgcacactggccaa 39201582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 24875437 - 24875370
Alignment:
Q  35 cgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||    
T  24875437 cgacccatcaaaggtggacgattaatccggctcgtgcgtagagacatgcgcactggtcaaacgttgtt 24875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 11845821 - 11845883
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||    
T  11845821 catcaaaggtgggcgattaattcggctcatacgtagaggcatgcgcactggccaaacgttgtt 11845883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 42861246 - 42861303
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||    
T  42861246 gtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcc 42861303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 9805101 - 9805029
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  9805101 gtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 9805029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 40117512 - 40117440
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||  || |||| ||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  40117512 gttttcgatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 40117440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 12082000 - 12081933
Alignment:
Q  35 cgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| |||||||| ||||||||||| ||||||||  |||||||||||||||| |||||||    
T  12082000 cgactcaccaaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgttgtt 12081933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 1538510 - 1538464
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  1538510 gtggacgattaatccggctcatgcgtagaggcatgcgcactggccaa 1538464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 14588627 - 14588696
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    ||||||| |||| |||| |||||||| |||| |||||||||||||||| |||||||||||| ||| ||||    
T  14588627 gttttcggctcaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtt 14588696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 30349658 - 30349594
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctagaa 112  Q
    |||||||| |||||| |||||||| ||||| |||||||||||||||||| ||||| || ||||||    
T  30349658 gtggacgactaattcagctcatgcatagaggcatgcgcactggccaatcattgttccccctagaa 30349594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 42086424 - 42086352
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| |||||||||||||||| |||||||||||| ||| |||||||    
T  42086424 gtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgtt 42086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 9168264 - 9168335
Alignment:
Q  31 ttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||| ||  ||| |||||||| |||| ||||||||||||||||  ||||||||||||||| |||||||    
T  9168264 ttttcgacccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcactggccaagcgttgtt 9168335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 20590079 - 20590024
Alignment:
Q  47 agtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||||| |||||||    
T  20590079 agtggacaactaatacggctcatgcgtagagtcatgcgcactggccaagcgttgtt 20590024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 20255468 - 20255406
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||||| ||||||| |||| |||||||| |||| || ||||||||||||| ||||||||||||    
T  20255468 cagtttccgactcaccaaaggtggacgactaatccgactcatgcgtagaggcatgcgcactgg 20255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 20682645 - 20682699
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||| |||||| ||||||||| |||||||||||||||| |||||||    
T  20682645 gtggtcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 20682699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 23383756 - 23383682
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||| |||| || |||| |||||||| |||| | |||||||||||||| || ||||||||||||| |||||||    
T  23383756 cagtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcaagcgcactggccaagcgttgtt 23383682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 41163488 - 41163542
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||| |||| | ||||||||||||||||||| ||||||||||| |||||||    
T  41163488 gtggacgactaatccagctcatgcgtagagacatgtgcactggccaaacgttgtt 41163542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 42291525 - 42291587
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||||||| |||| |||||| ||||||||| |||| ||||||||||| |||||||    
T  42291525 catcaaaggtggacgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgtt 42291587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 24463896 - 24463968
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||  ||| |||| ||| |||| |||||| ||| ||||| ||||||||||||||||||||||||    
T  24463896 gttttcgacccagtaaaggtgggcgactaatccggctcgtgcatagaggcatgcgcactggccaatcgttgtt 24463968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 35813008 - 35813068
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    ||||||||| | ||||| |||||||| |||| || |||||| |||||||||||||||||||    
T  35813008 gttttcgacacttcaaaggtggacgactaatccgactcatgtgtagagacatgcgcactgg 35813068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 14974347 - 14974398
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||||||| |||| |||||||||||||||| |||| |||||||||||    
T  14974347 caaaggtggacgactaatccggctcatgcgtagaggcatgtgcactggccaa 14974398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 20525917 - 20525874
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggc 91  Q
    |||||||| |||| |||||||||||||||| |||||||||||||    
T  20525917 gtggacgactaatccggctcatgcgtagaggcatgcgcactggc 20525874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 19572799 - 19572757
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| |||||||||||||||| ||||||||||||||||    
T  19572799 acgactaatccggctcatgcgtagaggcatgcgcactggccaa 19572757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 13664334 - 13664293
Alignment:
Q  53 cgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||  ||||||||||||||| ||||||||||||||||    
T  13664334 cgattaatctggctcatgcgtagaggcatgcgcactggccaa 13664293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 38897756 - 38897801
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  38897756 taatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 38897801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 3653924 - 3653996
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||  || |||| |||||||| |||| || ||| ||||||||| |||||||||||| ||| |||||||    
T  3653924 gttttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 3653996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 8513616 - 8513536
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctag 110  Q
    |||| |||| || |||| |||||||| ||||  ||||| ||||||||| |||| ||||||||||| | |||||||| ||||    
T  8513616 gtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagcattgtttcccctag 8513536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 14152147 - 14152075
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||  ||||||  ||||||||||||| |||||||||  ||||  ||||| |||||||||| |||||||    
T  14152147 gttttcgatccatcaatggtggacgattaatccggctcatggatagaagcatgcacactggccaagcgttgtt 14152075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 14728153 - 14728109
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgt 101  Q
    |||| |||||||||||||||| ||||||||||| |||| ||||||    
T  14728153 taatccggctcatgcgtagaggcatgcgcactgaccaagcgttgt 14728109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 28857193 - 28857161
Alignment:
Q  62 cggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||||||||||| ||||||||||||||||    
T  28857193 cggctcatgcgtagaggcatgcgcactggccaa 28857161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 39099789 - 39099853
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| || |||| |||| ||| |||| |||||||||||||||| |||| |||||||||||    
T  39099789 gtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgtgcactggccaa 39099853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 43399212 - 43399156
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    |||| |||||||| |||| | |||| ||||||||| |||||||||||||||| ||||    
T  43399212 caaatgtggacgactaatcctgctcgtgcgtagaggcatgcgcactggccaagcgtt 43399156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 8141189 - 8141127
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    |||| |||||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  8141189 caaatgtggacgactaattcagctcatgcgtagaggcatgcgcactggccaagcgttgtttcc 8141127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 26571029 - 26570952
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||||||||||| |||||||| |||| |||||||||||||||  ||| | |||||||||| |||||||    
T  26571029 catcggtttccgactcatcaaaggtggacgactaatccggctcatgcgtagatgcatacacactggccaagcgttgtt 26570952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 43027410 - 43027333
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||| |||||||  ||||||| |||| |||||||||||||||| |||||||| ||| |||||||||||    
T  43027410 catcggtttccgacccatcaaagatggacgactaatccggctcatgcgtagaggcatgcgcattggacaatcgttgtt 43027333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 4479306 - 4479378
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| | |||||||||||||| |||||||||||||||| |||||||    
T  4479306 gtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttgtt 4479378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 18374110 - 18374038
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| || ||||  ||||||| |||| |||||||||||||||| |||||||||||| ||| |||||||    
T  18374110 gttttcgacccaccaaagttggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgtt 18374038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 1013009 - 1013059
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||||||||||||||||| |||| | ||||||||| |||||||    
T  1013009 acgattaattcggctcatgcgtagaggcatgtgtactggccaagcgttgtt 1013059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 2467146 - 2467192
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||| ||||||||||||||||||||||    
T  2467146 gtggacgactaatccggctcatgcatagagacatgcgcactggccaa 2467192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 10535412 - 10535474
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||||| ||||| | |||| ||| |||| ||||||||||||||||| ||||||||||||||||    
T  10535412 cagtttccgacttaccaaaggtgaacgactaattcggctcatgcgtggagacatgcgcactgg 10535474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 10927684 - 10927634
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  10927684 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 10927634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 3692933 - 3692864
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    |||||||||  | |||| ||| ||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  3692933 gttttcgacctaccaaaggtgaacgattaattcggctcatgcgtagaggtatgcgcactgaccaaacgtt 3692864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 6100572 - 6100500
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||  ||| ||| |||| |||| |||||||||||||| | |||||||||||||||| |||||||    
T  6100572 gttttcgacccactaaaggtgaacgactaatccggctcatgcgtagtggcatgcgcactggccaagcgttgtt 6100500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 23895668 - 23895596
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||||||| ||||||||||||| |  ||| |||||||||  ||||||||||||||| |||||||    
T  23895668 gtttccgacccatcaaaggtggacgattaatccatctcgtgcgtagaggtatgcgcactggccaagcgttgtt 23895596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 583902 - 583840
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| ||| |||| || ||||||||||||| |||||||||||| ||| |||||||    
T  583902 catcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 22958857 - 22958792
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctct 108  Q
    |||| |||||||| |||| |||||||||| ||||||||||| ||||| |||| | ||||| |||||    
T  22958857 caaaggtggacgactaatccggctcatgcatagagacatgcacactgaccaagcattgttccctct 22958792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 25848277 - 25848212
Alignment:
Q  29 agttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||||| || |||| |||||||| || | || |||||||||||||||||| |||||| ||||    
T  25848277 agttttcgacccagcaaaggtggacgactagtccgactcatgcgtagagacatgtgcactgaccaa 25848212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 35496266 - 35496343
Alignment:
Q  31 ttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctct 108  Q
    |||||||  ||||||| |||| |||||||| | |||| | ||||||| ||||||||||| ||||  ||||||||||||    
T  35496266 ttttcgatccatcaaaggtgggcgattaatccagctcgtacgtagaggcatgcgcactgaccaagtgttgtttcctct 35496343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 8586981 - 8587021
Alignment:
Q  62 cggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||||||||||  ||||||||||||||| |||||||    
T  8586981 cggctcatgcgtagaggtatgcgcactggccaagcgttgtt 8587021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 24938582 - 24938654
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctagaa 112  Q
    ||||||| ||||| || |||| ||| |||||||||||| |||||||| || ||||  |||||||| |||||||    
T  24938582 catcaaaggtggatgactaatccggttcatgcgtagaggcatgcgcattgaccaagtgttgtttcatctagaa 24938654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 1624 - 1696
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| || |||| |||| ||| ||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  1624 gttttcgacccaccaaaggtgggcgactaatttggctcatgcgtagaggcatgcgcactggctaatcgttgtt 1696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 29805450 - 29805522
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||  ||| || ||||||||||| ||||||||||||||||||||||||||| |||| |||||||    
T  29805450 gtttccgactcactaaaggtagacgattaatttggctcatgcgtagagacatgcgcactgaccaaacgttgtt 29805522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 1797559 - 1797484
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||||  |||||||  ||||||| || | |||||| |||||||||||||||||||||||||| ||||||||||    
T  1797559 gttttcgatccatcaaagatggacgactagtccggctcgtgcgtagagacatgcgcactggccaagcgttgtttcc 1797484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 3353513 - 3353448
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||| |||||||| |||| |||||| ||||||||| ||||||||||||||||  |||||||||    
T  3353513 catcaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaaatgttgtttcc 3353448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 38578877 - 38578949
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||| ||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  38578877 gtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 38578949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 41945567 - 41945503
Alignment:
Q  35 cgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgtt 99  Q
    ||||||| |||| |||||||| |||| |||||| ||||||||| |||||||||||||||| ||||    
T  41945567 cgactcaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 41945503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 19914723 - 19914785
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| ||||||||  ||||||||||||||| |||||||| ||||||| |||||||    
T  19914723 catcaaaggtgggcgattaatctggctcatgcgtagaggcatgcgcattggccaagcgttgtt 19914785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 37514998 - 37514948
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| |||||| ||||||||||||||||||||| |||| |||||||    
T  37514998 acgattaatccggctcgtgcgtagagacatgcgcactgaccaaacgttgtt 37514948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 39420926 - 39420864
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| || ||||| |||| |||||||||||||||| || ||||||||||||| |||||||    
T  39420926 catcaaaggtagacgactaatccggctcatgcgtagaggcacgcgcactggccaagcgttgtt 39420864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 48804764 - 48804718
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  48804764 gtggacgactaatccggctcatgcgtagaggcatgcgcactggccaa 48804718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 17748387 - 17748464
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||| || |||| |||||||| |||| |||||| | ||||||| |||||||||||||||| |||||||    
T  17748387 catcggtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgtt 17748464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 42032200 - 42032123
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||| ||||||| |||||| | ||||||||||||||||||||   ||| ||||||||||| |||||||    
T  42032200 catcggtttccgacccatcaaaggtggacaactaattcggctcatgcgtagatgtatgtgcactggccaaacgttgtt 42032123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 42210296 - 42210345
Alignment:
Q  54 gattaattcggctcatgcgtagagacatgcgcactggccaatcgttgttt 103  Q
    ||||||| |||||| ||||||||| |||||||||||||||| ||||||||    
T  42210296 gattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttt 42210345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 43862009 - 43862054
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||    
T  43862009 taatccggctcatgcgtagaggcatgcgcactggccaaacgttgtt 43862054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 39475039 - 39474967
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| ||  ||| |||||||| |||| ||||||||||||||||  |||||||||| |||| |||||||    
T  39475039 gttttcgacccactaaaggtggacgactaatccggctcatgcgtagaggtatgcgcactgaccaagcgttgtt 39474967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 4228765 - 4228836
Alignment:
Q  31 ttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||| ||||||  |||| ||| |||| |||||||||||||| | |||| ||||||||||| |||||||    
T  4228765 ttttcgacccatcaatggtgggcgactaatccggctcatgcgtaggggcatgtgcactggccaaacgttgtt 4228836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 3603443 - 3603397
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactg 89  Q
    |||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  3603443 caaaagtgaacgattaatccggctcgtgcgtagaggcatgcgcactg 3603397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 10047904 - 10047950
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||||||| |||||| |||||||||||||| | ||||||||||||||    
T  10047904 gtggacgactaattctgctcatgcgtagaggcctgcgcactggccaa 10047950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 16802224 - 16802150
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||||| || |||  |||  ||| |||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  16802224 cagttttcgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatacgcactggccaatcgttgtt 16802150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 13095930 - 13095893
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  13095930 taatccggctcatgcgtagaggcatgcgcactggccaa 13095893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 22573892 - 22573851
Alignment:
Q  49 tggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||||||||||| ||||||||||||| || ||||||||||||    
T  22573892 tggacgattaatccggctcatgcgtaaaggcatgcgcactgg 22573851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 24983447 - 24983487
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcact 88  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  24983447 gtggacgactaatccggctcatgcgtagaggcatgcgcact 24983487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 27875098 - 27875162
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||| ||  ||| |||||||| |||| || ||||||||||||| |||| |||||||||||    
T  27875098 gttttcgacccactaaaggtggacgactaatgcgactcatgcgtagaggcatgtgcactggccaa 27875162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 34659325 - 34659253
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| || |||  |||| ||| |||| |||||| ||||||||| |||||||||||| ||| |||||||    
T  34659325 gttttcgacacaccaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 34659253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 8888982 - 8888907
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||||  ||||||| |||||||| |||| || |||||||||||||  ||||||||||||||| ||||||||||    
T  8888982 gttttcgatccatcaaaggtggacgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttcc 8888907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 29333162 - 29333221
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||| | ||||||||||||||||||| |||||||||||||||| |||||||    
T  29333162 caaaggtggacgactgattcggctcatgcgtagaggcatgcgcactggccaaacgttgtt 29333221  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 2271323 - 2271385
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||||||| |||| |||||| ||||||||||||||||||||||| || |||||||    
T  2271323 catcaaaggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgtt 2271385  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 5253233 - 5253297
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| || |||| |||| |||||||| |||||||||||||||| ||||||||||||||||    
T  5253233 gtttccgacccaccaaaggtgggcgattaatccggctcatgcgtagaggcatgcgcactggccaa 5253297  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 29444802 - 29444857
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctagaa 112  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||| || ||||||    
T  29444802 taatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctagaa 29444857  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 21898726 - 21898676
Alignment:
Q  52 acgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||||    
T  21898726 acgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 21898676  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 8932761 - 8932697
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| ||||||| ||||  ||||||| |||||||||||||||| |||||||||| |||||    
T  8932761 gtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaa 8932697  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 8938811 - 8938751
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactgg 90  Q
    |||| |||| ||||||| |||||||| ||||||||||||||||||||  | ||||||||||    
T  8938811 gtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactgg 8938751  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 8944227 - 8944163
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| ||||||| ||||  ||||||| |||||||||||||||| |||||||||| |||||    
T  8944227 gtttccgacccatcaaaggtgggtgattaatccggctcatgcgtagaggcatgcgcactagccaa 8944163  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 9633635 - 9633707
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||| ||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  9633635 gtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 9633707  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 12606522 - 12606458
Alignment:
Q  38 ctcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| |||| ||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  12606522 ctcaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgtt 12606458  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 13036014 - 13036078
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||| || ||| ||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  13036014 gtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaa 13036078  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 34954629 - 34954701
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| ||||||| |||||||| ||||  |||||||||||||||  ||| ||||||||||| |||||||    
T  34954629 gtttccgacccatcaaaggtggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgtt 34954701  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 3587950 - 3588027
Alignment:
Q  25 catcagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||| |||  ||||||| || ||||| |||| ||| ||||||||||||  ||| ||||||||||| |||||||    
T  3587950 catcagtttccgatccatcaaaggttgacgactaatccggttcatgcgtagaggtatgtgcactggccaagcgttgtt 3588027  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 10311518 - 10311551
Alignment:
Q  69 tgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||||||||||||||||||||||| |||||||    
T  10311518 tgcgtagagacatgcgcactggccaagcgttgtt 10311551  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 3601184 - 3601112
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||||||| |||| |||||| || ||| || |||||||||||||||| |||||||    
T  3601184 gtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgtt 3601112  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 11142668 - 11142628
Alignment:
Q  65 ctcatgcgtagagacatgcgcactggccaatcgttgtttcc 105  Q
    ||||||||||||| |||||||||||| ||| ||||||||||    
T  11142668 ctcatgcgtagaggcatgcgcactggtcaaacgttgtttcc 11142628  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 13391386 - 13391322
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||| ||| |||  ||| ||| |||| |||||| ||||||||| ||||||||||||||||    
T  13391386 gttttcgacccattaaatatgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaa 13391322  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 30788863 - 30788935
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||| || |||| |||| ||| |||| |||||| ||| ||||| |||||||||||||||| |||||||    
T  30788863 gtttccgacccaccaaaggtgggcgactaatccggctcgtgcctagaggcatgcgcactggccaaacgttgtt 30788935  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 65173 - 65234
Alignment:
Q  41 atcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||||||  ||| |||| | ||||||||||||||||||||||||||||||| |||||||    
T  65173 atcaaaagtgagcgactaatccagctcatgcgtagagacatgcgcactggccaagcgttgtt 65234  T

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Target: scaffold0086 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 26282 - 26210
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||||||  |||||||| |||| |||||| ||||||||| ||||| |||||||||| |||||||    
T  26282 gtttccgactcatcaattgtggacgactaatccggctcgtgcgtagaggcatgcacactggccaagcgttgtt 26210  T

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Target: scaffold0170 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 9931 - 9872
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||| |||||||| |||| |||||| ||||||||| |||||||||||||||| |||||||    
T  9931 caaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 9872  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 8709 - 8783
Alignment:
Q  28 cagttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||| |||| || |||| |||||||| |||| | |||||||||||||| || ||||||||||||| |||||||    
T  8709 cagtttccgacccaccaaaggtggacgactaatccagctcatgcgtagaggcaagcgcactggccaagcgttgtt 8783  T

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Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 6053 - 6000
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgt 101  Q
    |||||||| ||||||| ||||||||||||| |||| ||||||||||| ||||||    
T  6053 gtggacgactaattcgtctcatgcgtagaggcatgtgcactggccaagcgttgt 6000  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 12662 - 12600
Alignment:
Q  40 catcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    ||||||| |||| ||| |||| || ||||||||||||| |||||||||||| ||| |||||||    
T  12662 catcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 95009 - 95067
Alignment:
Q  48 gtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcct 106  Q
    |||| ||| |||| ||||||||||||| || |||||||||||| ||| |||||||||||    
T  95009 gtgggcgactaatccggctcatgcgtaaaggcatgcgcactggtcaaacgttgtttcct 95067  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 6927 - 6890
Alignment:
Q  57 taattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  6927 taatccggctcatgcgtagaggcatgcgcactggccaa 6890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 319508 - 319439
Alignment:
Q  43 caaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaatcgttgtttcctctagaa 112  Q
    |||| |||||||| |||| | |||||||| |||||  ||||||||||||||| ||||||| || ||||||    
T  319508 caaaggtggacgactaatccagctcatgcatagagggatgcgcactggccaagcgttgttccccctagaa 319439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 219468 - 219404
Alignment:
Q  30 gttttcgactcatcaaaagtggacgattaattcggctcatgcgtagagacatgcgcactggccaa 94  Q
    ||||||||  ||||||| |||||||| |||| | | || ||||||||| ||||||||||||||||    
T  219468 gttttcgatccatcaaaggtggacgactaatccagttcgtgcgtagaggcatgcgcactggccaa 219404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 271116 - 271156
Alignment:
Q  62 cggctcatgcgtagagacatgcgcactggccaatcgttgtt 102  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  271116 cggctcgtgcgtagagacatgcgcactgaccaagcgttgtt 271156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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