View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0553_low_13 (Length: 373)
Name: NF0553_low_13
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 26836057 - 26836411
Alignment:
| Q |
7 |
tcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattggctaacatcactattttcttttaccaaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836057 |
tcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattggctaacatcactattttcttttaccaaga |
26836156 |
T |
|
| Q |
107 |
agctcaataaatcttgtttagaattgtttttgagtgacttctttcgagcttcgactatagacaacaagattctgtcgatttctttgccaagttttttagc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26836157 |
agctcaataaatcttgtttagaattgtttttgagtgacttctttcgagcttcgactatagacaacaagattttgtcgatttctttgccaagttttttagc |
26836256 |
T |
|
| Q |
207 |
cactagatttttcttgacattaaaatacttgccaaagggaacacctacatgcctattggttttaaagagagtcatttgtaaagctcttaatttgtgaagc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836257 |
cactagatttttcttgacattaaaatacttgccaaagggaacacctacatgcctattggttttgaagagagtcatttgtaaagctcttaatttgtgaagc |
26836356 |
T |
|
| Q |
307 |
acctctctagcattttcgccttccatgccaaaacttgttttcgctatgatctctc |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836357 |
acctctctagcattttcgccttccatgccaaaacttgttttcgctatgatctctc |
26836411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 45420990 - 45421344
Alignment:
| Q |
7 |
tcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattggctaacatcactattttcttttaccaaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
45420990 |
tcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattggctaacatcactattttcttttagcaaca |
45421089 |
T |
|
| Q |
107 |
agctcaataaatcttgtttagaattgtttttgagtgacttctttcgagcttcgactatagacaacaagattctgtcgatttctttgccaagttttttagc |
206 |
Q |
| |
|
| |||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45421090 |
aactcaataaatcttggtaagaattgtttttcagtgacttctttcgagcttcgacaatagacaacaagattctgtcgatttctttgccaagtttttcagc |
45421189 |
T |
|
| Q |
207 |
cactagatttttcttgacattaaaatacttgccaaagggaacacctacatgcctattggttttaaagagagtcatttgtaaagctcttaatttgtgaagc |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45421190 |
ctctagatttttcttgacattaaaatacttgccaaagggaacacctacatacctattggagttaaagagagtcatttgtaaagttcttaatttgtgaagc |
45421289 |
T |
|
| Q |
307 |
acctctctagcattttcgccttccatgccaaaacttgttttcgctatgatctctc |
361 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45421290 |
acctctctagcattttcatcttccatgccaaaacttgttttcgctatgatctctc |
45421344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 45411890 - 45412244
Alignment:
| Q |
7 |
tcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaatgtctttgcagattggctaacatcactattttcttttaccaaga |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||||||| | ||| | | | ||| |||||||||||| ||| | |
|
|
| T |
45411890 |
tcatgtccaccaaagaagaaagtcttgcattcatcaactacttctcttgatgtaagtgtctttcccaattttccatcttcattattttcttttagcaaca |
45411989 |
T |
|
| Q |
107 |
agctcaataaatcttgtttagaattgtttttgagtgacttctttcgagcttcgactatagacaacaagattctgtcgatttctttgccaagttttttagc |
206 |
Q |
| |
|
| | |||||||||| || |||||| | ||| |||| || || | |||||| || || ||||| |||| | ||||||||||||||||||||||||| || |
|
|
| T |
45411990 |
accctaataaatctttttgagaattttgtttaggtgaatttttcctagcttctacaattgacaataagagtttgtcgatttctttgccaagttttttggc |
45412089 |
T |
|
| Q |
207 |
cactagatttttcttgacattaaaatacttgccaaagggaacacctacatgcctattggttttaaagagagtcatttgtaaagctcttaatttgtgaagc |
306 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||||||||| ||||||| | |||||| |||||||||||||||||||| ||||||||||||| || | |
|
|
| T |
45412090 |
ctctaagtttttcttgacattaaagtacttgccaaagggaactcctacatatcgattggtgttaaagagagtcatttgtaaggctcttaatttgtcaaac |
45412189 |
T |
|
| Q |
307 |
acctctctagcattttcgccttccatgccaaaacttgttttcgctatgatctctc |
361 |
Q |
| |
|
|||||| |||||||||| | ||| |||||||||||||| ||||||||||||| |
|
|
| T |
45412190 |
acctctttagcattttcatcctccgcaccaaaacttgtttttgctatgatctctc |
45412244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 687 times since January 2019
Visitors: 3655