View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_2 (Length: 635)

Name: NF0553_low_2
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_2
NF0553_low_2
[»] chr4 (5 HSPs)
chr4 (145-606)||(7398313-7398774)
chr4 (160-606)||(39075079-39075525)
chr4 (11-99)||(7398173-7398261)
chr4 (172-241)||(39097552-39097621)
chr4 (187-237)||(39087890-39087940)
[»] chr8 (2 HSPs)
chr8 (179-333)||(34173992-34174146)
chr8 (563-606)||(34174382-34174425)
[»] chr7 (1 HSPs)
chr7 (172-241)||(8936278-8936347)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 145 - 606
Target Start/End: Original strand, 7398313 - 7398774
Alignment:
Q  145 gtgtaagtttcaagcatccatggacatagggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttcc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7398313 gtgtaagtttcaagcatccatggacatagggtcgtttcctatagcctccaaaatattataaggaaaagaaacttcaatatcaatactaccttcttcttcc 7398412  T
Q  245 ccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtaataattga 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7398413 ccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtagtaattga 7398512  T
Q  345 accgtggtgaactgcttgctatcaacaaattacttgctggtttacatggctctagtatcgacggcgttttcaaccaagattcaatatcactcattatctt 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7398513 accgtggtgaactgcttgctatcaacaaattacttgctgatttaactggctctagtatcgacggcgttttcaaccaagattcaatatcactcattatctt 7398612  T
Q  445 ctcatgatgagattttgatgaaatctccttgttcatttctatagcaattttactaatcccactttccattaactcccctatttgcattattacacatcca 544  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7398613 ctcatgatgagattttgatgaaatctccttgttcatttccatagcaattttaccaatcccactttccattaactcccctatttgcattattacacatcca 7398712  T
Q  545 actgctccgattccattcccaaaataattctcttctaactttggacacattcttgttctaca 606  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7398713 actgctccgattccattcccaaaataattctcttctaactttgggcacattcttgttctaca 7398774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 160 - 606
Target Start/End: Original strand, 39075079 - 39075525
Alignment:
Q  160 atccatggacatagggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacatta 259  Q
    ||||||||||| | | || ||||| ||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||| ||    
T  39075079 atccatggacagatgatcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttcttcaccaccaagcacaata 39075178  T
Q  260 actataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtaataattgaaccgtggtgaactgc 359  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  39075179 actctaccaatatttcttttaagtccaacaccatttctaactgcaattggcttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgc 39075278  T
Q  360 ttgctatcaacaaattacttgctggtttacatggctctagtatcgacggcgttttcaaccaagattcaatatcactcattatcttctcatgatgagattt 459  Q
    ||||||||||||||||||||| || | ||| || |||  |||| ||||| |||||||||||||| |||   | | ||| || |||||||||||||||||     
T  39075279 ttgctatcaacaaattacttgatgatctacctgcctccggtatagacggggttttcaaccaagactcatagttattcactaccttctcatgatgagattg 39075378  T
Q  460 tgatgaaatctccttgttcatttctatagcaattttactaatcccactttccattaactcccctatttgcattattacacatccaactgctccgattcca 559  Q
    |   || ||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||  |||||||||||||    
T  39075379 tatagatatcaccttgttcatttccatagcaattttaccaatcccactttccattaattcccctacttgcattattacatatccagttgctccgattcca 39075478  T
Q  560 ttcccaaaataattctcttctaactttggacacattcttgttctaca 606  Q
     | ||||||||||| |||||||||||||||||||||||||| |||||    
T  39075479 cttccaaaataattatcttctaactttggacacattcttgtcctaca 39075525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 7398173 - 7398261
Alignment:
Q  11 acaatatgtcaaatagtcgaagaatgaaaacaaatagaacatataaagcagnnnnnnnnttgagtacattttgcttacgatttgagacg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||    
T  7398173 acaatatgtcaaatagtcgaagaatgaaaacaaatagaacatataaagcagaaaaaaaattgagtacattttgcttacaatttgagacg 7398261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 39097552 - 39097621
Alignment:
Q  172 agggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttct 241  Q
    |||||| ||||| |||||||||||||||||||||| ||   ||||||||| |||||||||||||||||||    
T  39097552 agggtcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttct 39097621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 39087890 - 39087940
Alignment:
Q  187 agcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttc 237  Q
    |||||||||||| ||||||| || | |||||||||||||||| ||||||||    
T  39087890 agcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttc 39087940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 333
Target Start/End: Original strand, 34173992 - 34174146
Alignment:
Q  179 tttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacattaactataccaatatttcttt 278  Q
    ||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||  |||||| ||  | | ||||| |||| |||||| |||    
T  34173992 tttccaatagcctccaaaatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccacaaaatatagtaactttaccgatattttttt 34174091  T
Q  279 taagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattacc 333  Q
     ||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||    
T  34174092 gaagtccaaccccattcctaactgcaattggcttaccccaaccaaagtcattacc 34174146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 606
Target Start/End: Original strand, 34174382 - 34174425
Alignment:
Q  563 ccaaaataattctcttctaactttggacacattcttgttctaca 606  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  34174382 ccaaaataattctctgctaactttggacacattcttgtcctaca 34174425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 8936347 - 8936278
Alignment:
Q  172 agggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttct 241  Q
    |||||| ||||| || ||||||||||| ||||| |||| | |||||| ||  ||||||||||||||||||    
T  8936347 agggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttct 8936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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