View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_21 (Length: 337)
Name: NF0553_low_21
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 8368592 - 8368266
Alignment:
| Q |
11 |
cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8368592 |
cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaa |
8368493 |
T |
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| Q |
111 |
aaatatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga |
210 |
Q |
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| T |
8368492 |
aaatatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga |
8368393 |
T |
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| Q |
211 |
atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagaatatgagagaataggaaacttggtattgaagataaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |
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| T |
8368392 |
atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaa |
8368293 |
T |
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| Q |
311 |
taagacattggctattgcaggaccatt |
337 |
Q |
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| T |
8368292 |
taagacattggctattgcaggaccatt |
8368266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 8400818 - 8401144
Alignment:
| Q |
11 |
cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaa |
110 |
Q |
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| T |
8400818 |
cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaa |
8400917 |
T |
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| Q |
111 |
aaatatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga |
210 |
Q |
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| T |
8400918 |
aaatatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga |
8401017 |
T |
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| Q |
211 |
atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagaatatgagagaataggaaacttggtattgaagataaa |
310 |
Q |
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| T |
8401018 |
atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaa |
8401117 |
T |
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| Q |
311 |
taagacattggctattgcaggaccatt |
337 |
Q |
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| T |
8401118 |
taagacattggctattgcaggaccatt |
8401144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 8422395 - 8422721
Alignment:
| Q |
11 |
cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8422395 |
cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaa |
8422494 |
T |
|
| Q |
111 |
aaatatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga |
210 |
Q |
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| T |
8422495 |
aaatatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga |
8422594 |
T |
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| Q |
211 |
atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagaatatgagagaataggaaacttggtattgaagataaa |
310 |
Q |
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| T |
8422595 |
atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaa |
8422694 |
T |
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| Q |
311 |
taagacattggctattgcaggaccatt |
337 |
Q |
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| T |
8422695 |
taagacattggctattgcaggaccatt |
8422721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 55331091 - 55331029
Alignment:
| Q |
62 |
agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc |
124 |
Q |
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| T |
55331091 |
agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc |
55331029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 55336526 - 55336466
Alignment:
| Q |
62 |
agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacct |
122 |
Q |
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|||||||||||||||| ||||||||| |||| ||||||| || ||| ||||||||||||| |
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| T |
55336526 |
agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct |
55336466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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