View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_22 (Length: 334)
Name: NF0553_low_22
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_22 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 90 - 334
Target Start/End: Complemental strand, 26752993 - 26752749
Alignment:
| Q |
90 |
tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752993 |
tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt |
26752894 |
T |
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| Q |
190 |
caccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnnnnnnccttcacagcaggtttctaccctgtagtacaaaatgcttattccttt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26752893 |
caccctctcagtagaaaaccctgaacaaaacatcatactctcccccaaaaaaaccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt |
26752794 |
T |
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| Q |
290 |
gccatatggttcacccaaaaacacaacaatctcaacaccactacc |
334 |
Q |
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| T |
26752793 |
gccatatggttcacccaaaaacacaaaaatctcaacaacactacc |
26752749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 26700448 - 26700367
Alignment:
| Q |
245 |
ttcacagcaggtttctaccctgtagtacaaaatgcttattcctttgccatatggttcacccaaaaacacaacaatctcaaca |
326 |
Q |
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| T |
26700448 |
ttcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaaaaatctcaaca |
26700367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 26677381 - 26677194
Alignment:
| Q |
139 |
cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn |
238 |
Q |
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|||||| |||||||||||||| |||||||||||||||| | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || ||| |
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| T |
26677381 |
cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa |
26677282 |
T |
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| Q |
239 |
nnnnccttcacagcaggtttctaccctgtagtacaaaatgcttattcctttgccatatggttcacccaaaaacacaacaatctcaaca |
326 |
Q |
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| || || ||||| || || | || | ||||||||||||||||||||||||||||||| |||| |||||| ||||| |||| |
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| T |
26677281 |
ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcactcaaatacacaaaaatctaaaca |
26677194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 326
Target Start/End: Original strand, 26688709 - 26688896
Alignment:
| Q |
139 |
cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn |
238 |
Q |
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|||||| |||||||||||||| |||||||||||||||| | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || ||| |
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| T |
26688709 |
cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa |
26688808 |
T |
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| Q |
239 |
nnnnccttcacagcaggtttctaccctgtagtacaaaatgcttattcctttgccatatggttcacccaaaaacacaacaatctcaaca |
326 |
Q |
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| T |
26688809 |
ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcactcaaatacacaaaaatctaaaca |
26688896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 26700562 - 26700486
Alignment:
| Q |
131 |
tcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaa |
207 |
Q |
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| T |
26700562 |
tcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaa |
26700486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 26692995 - 26693037
Alignment:
| Q |
273 |
aaaatgcttattcctttgccatatggttcacccaaaaacacaa |
315 |
Q |
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| T |
26692995 |
aaaatgcttattcattcgccatatggttcactcaaaaacacaa |
26693037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 26715592 - 26715550
Alignment:
| Q |
273 |
aaaatgcttattcctttgccatatggttcacccaaaaacacaa |
315 |
Q |
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||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
26715592 |
aaaatgcttattcattcgccatatggttcactcaaaaacacaa |
26715550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 26738832 - 26738790
Alignment:
| Q |
273 |
aaaatgcttattcctttgccatatggttcacccaaaaacacaa |
315 |
Q |
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||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
26738832 |
aaaatgcttattcattcgccatatggttcactcaaaaacacaa |
26738790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 26745867 - 26745825
Alignment:
| Q |
273 |
aaaatgcttattcctttgccatatggttcacccaaaaacacaa |
315 |
Q |
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||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
26745867 |
aaaatgcttattcattcgccatatggttcactcaaaaacacaa |
26745825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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