View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_23 (Length: 329)

Name: NF0553_low_23
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_23
NF0553_low_23
[»] chr8 (1 HSPs)
chr8 (85-235)||(33623878-33624028)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 33624028 - 33623878
Alignment:
Q  85 agaaagagattctagaaacagttgttatgaatcttccaccggaaaagaatctgaattcgtcaacagcaacaaggtttctattcggattgttacgaactgc 184  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33624028 agaaagagatactagaaacagttgttatgaatcttccaccggaaaagaatctgaattcgtcaacagcaacaaggtttctatttggattgttacgaactgc 33623929  T
Q  185 gaatatactaaacgcttcagaatcatgtagaaacgctttggagaagaaaat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33623928 gaatatactaaacgcttcagaatcatgtagaaacgctttggagaagaaaat 33623878  T

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