View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_24 (Length: 326)
Name: NF0553_low_24
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 97 - 296
Target Start/End: Complemental strand, 49752018 - 49751822
Alignment:
| Q |
97 |
agttgagttggttgtacttgttgttaataaaaacttgtcgctcaactaccgttttccaattcttggacaatggcaactcacaaactcgctttgatcatcc |
196 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49752018 |
agttgagttggttgtacttgttattaa---aaacttgtcgctcaactaccgttttccagttcttggacaatggcaactcacaaactcgctttgatcatcc |
49751922 |
T |
|
| Q |
197 |
aaaatccttcaaaccaaaacgagtttctcctcattaagcaatcacgtcctcccaaattcaacgacgaagaatacgattctttcctcgattctgatctctg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49751921 |
aaaatccttcaaaccaaaacgagtttctcctcattaagcaatcacgtcctcccaaattcaacgacgaagaatacgattctttcctcgattctgatctctg |
49751822 |
T |
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