View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0553_low_26 (Length: 324)
Name: NF0553_low_26
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_26 |
 | |
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| [»] chr3 (1 HSPs) |
| |
|
| [»] chr6 (31 HSPs) |
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|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
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|
| [»] scaffold0288 (1 HSPs) |
| | |
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| [»] scaffold0477 (1 HSPs) |
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|
| [»] chr7 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 1281165 - 1281460
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1281165 |
acaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattctttccttcatccccggctatcaattcattgatc |
1281264 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281265 |
aacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
1281364 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281365 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
1281460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4617073 - 4617368
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||| |||| |||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
4617073 |
acaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcattttctttcctttatctccggctatcacttcattgatc |
4617172 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
4617173 |
agctttgccaactcctctctcttcacattcgtatcgatttccataccaatctcccattcattacaaataaatctacagtctgttggctggtcggcaaaaa |
4617272 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4617273 |
atggccaacacaacattggcactccagcgcatatactttcagtggttgaattccatccgcaatgagtcaagaatcctccgattgaagggtggttca |
4617368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4601840 - 4602135
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
|||||||||| |||||||| |||||| ||| ||||||||| ||||||||| ||| ||||| ||||| |||| ||||||| |||||| |||||||||| |
|
|
| T |
4601840 |
acaaccacctagtctagtgctctcctttgccatcttcttcaactccatggccttttgcctcatcttcttgcctttatctccggctatcacttcattgatc |
4601939 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
4601940 |
agcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccattcattacaaataaatctacagtttgttggctgatcggcaaaaa |
4602039 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4602040 |
aaggccaacacaacatcggcactccagcacatatgctttcagtggttgagttccatccacaatgagtcaagaatccgccgatcgaagggtggttca |
4602135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4585687 - 4585982
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
|||||| || ||||| |||| |||||||||| ||||||||| || || ||| ||| ||||| |||||||| | ||||| | ||||||||||||| | |
|
|
| T |
4585687 |
acaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttccattctctcccaccatcaattcattgacc |
4585786 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
| |||| |||||||||||||||||||||| || || | |||||| ||||||| ||||||||| ||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
4585787 |
aacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctcccattcattgcaaataattctacagtttgttggctgatcagcaatga |
4585886 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4585887 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccacagtgagtcaagaatccaccaattgaagggtggttca |
4585982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4560557 - 4560852
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
|||||| || ||||| |||| | |||||||| ||||||| ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||||| | |
|
|
| T |
4560557 |
acaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatcttctttcctttatctcaggacatcaattcattgacc |
4560656 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|| ||| |||| ||||| ||||| ||||||||||| ||||| | ||||||||||||||||| |||||| |||| |||| || ||||||||| ||||||| |
|
|
| T |
4560657 |
agtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccattcattgcaaatatatcttcagtttgctggctgatctgcaaaaa |
4560756 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
4560757 |
atggccaacacaacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgactgatgggtggttca |
4560852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 4592282 - 4592575
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||| ||||||||| || || ||| ||| ||||| |||||||||| ||||| | |||||||||||||| |
|
|
| T |
4592282 |
acaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgata |
4592381 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|| ||| |||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||| |||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
4592382 |
agtttctccacctcctctctctttacattcgtatcaatttccatcccaatctcccattcattgtaaataagtctacagtttgttggctgatcactaaaga |
4592481 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggtt |
322 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4592482 |
atggccaacacaacattggaattccagcacatatactttcagtggttgagttccatccacaatgagtcaagaatccaccaattgaagggtggtt |
4592575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 324
Target Start/End: Complemental strand, 4267162 - 4266952
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||||| | |||| | || || ||||||||||||||||||| |||||| | ||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
4267162 |
atcaattcattgactaacttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttg |
4267063 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
4267062 |
gctgatcaccaaagaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccaatcga |
4266963 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
4266962 |
agggtggttca |
4266952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 324
Target Start/End: Original strand, 4469939 - 4470149
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||||||| | |||||||||| | ||||||| ||||||||| |||||||||||||| | || | |
|
|
| T |
4469939 |
atcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctcccattcattgcaaataaatctacaatttgcta |
4470038 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4470039 |
gctgatcaccaaagaatggccaacacaacattggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattga |
4470138 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
4470139 |
agggtggttca |
4470149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 324
Target Start/End: Original strand, 4563847 - 4564057
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||||| || ||| ||||||| |||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||| |||||||| ||||| |
|
|
| T |
4563847 |
atcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccattcattgtaaataagtctacagtttgttg |
4563946 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
4563947 |
gctgatcaccaaagaatggccaacacaacattggaactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccgccaattga |
4564046 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
4564047 |
agggtggttca |
4564057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 87 - 324
Target Start/End: Original strand, 4574417 - 4574654
Alignment:
| Q |
87 |
ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt |
186 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||||||||| ||| ||| |||||||||| ||||| ||||| |||||||||||| | ||||||| ||||| |
|
|
| T |
4574417 |
ctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccatt |
4574516 |
T |
|
| Q |
187 |
cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatcc |
286 |
Q |
| |
|
|||| |||||| |||| |||| || ||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4574517 |
cattgcaaatatatctgcagtttgctggctgatccgaaaaaaatggccaacataacattggaactccagcacatatgctttcagtggttgagttccatcc |
4574616 |
T |
|
| Q |
287 |
gcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4574617 |
gcaatgagtcaagaatccaccgactgaaaggtggttca |
4574654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 4613799 - 4613506
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
|||||| |||||||| |||| |||||| ||| ||||||||| || || ||| ||| ||||| |||||||||| ||||| | ||||||||||||| | |
|
|
| T |
4613799 |
acaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgcctcattttctttcctttctctcccaccatcaattcattgacc |
4613700 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|||||| | ||||| |||||||||||||| || || |||||||| ||||| | ||||||||| || ||| |||| |||| || ||||||||| || |||| |
|
|
| T |
4613699 |
agcttctctacctcatctctcttcacattggtgtcaatttccatcccaatttcccattcattgcatatatatctgcagtttgctggctgatccgcgaaaa |
4613600 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggtt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
4613599 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccacaatgagtcaagaatccgccaattgaagggtggtt |
4613506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 62 - 324
Target Start/End: Complemental strand, 4256660 - 4256397
Alignment:
| Q |
62 |
cttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgta |
161 |
Q |
| |
|
|||||||||||||||| || ||| ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||||| ||| |
|
|
| T |
4256660 |
cttcttcaattccatgaccttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacattagta |
4256561 |
T |
|
| Q |
162 |
tcgatttccataccaatcttccattcattacaaataaatctacagtctgttgg-ctgatcagcaaaaaatggccaacacaacattggcactccagcacat |
260 |
Q |
| |
|
| |||||| || ||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4256560 |
ttgatttcaattccaatctcccattcgctacaaataaatctacagtttgttggtctgatcagcaaaaaatggccaacacaacattggaactccggcacaa |
4256461 |
T |
|
| Q |
261 |
atgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
4256460 |
atgctttcaatggttgagttccatcctcaatgagtcaagaatccaccaactgaagagtggttca |
4256397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4480744 - 4481039
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||| ||||| |||| |||||| ||| ||||||||| ||||||||| ||| |||| |||||||||| ||||| | | |||||||||||| |
|
|
| T |
4480744 |
acaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggccttttgcttcatcttctttcctttctctcccaccaacaattcattgatt |
4480843 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
| | || |||| || |||||||||||||| ||||||||||| | ||||||| ||||||||| ||||||| ||||| || | ||||||||| ||||| | |
|
|
| T |
4480844 |
aacctctccacatcttctctcttcacattggtatcgatttcgagtccaatctcccattcattgcaaataattctacggttaggtggctgatcggcaaaga |
4480943 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4480944 |
atggccaacacaacattggcactccagcacatacactttcagtggttgagttccatccgcaatgagtcaagaatccgccgattgaagggtggttca |
4481039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4626002 - 4626297
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||| || ||| |||||||||| ||| ||||||||| ||||||||| ||| ||||| |||||||| | |||||| | |||||| |||||||| |
|
|
| T |
4626002 |
acaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttttgcctcatcttctttccgttatctcctgccatcaatgcattgatc |
4626101 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|| ||| | ||| |||| ||||||||||| | |||||||||||| ||||||| ||||||||| |||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
4626102 |
agtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccattcattgcaaatatatctacaatttgttggctgatcagcaaaat |
4626201 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||| ||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
4626202 |
ttggccaacacagcattggaactccagcgcatatgctttcaatggttgagttccatccacaatgagttaagaatccaccaattgaaggatggttca |
4626297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 322
Target Start/End: Original strand, 4622229 - 4622486
Alignment:
| Q |
65 |
cttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcg |
164 |
Q |
| |
|
|||||| ||||||||| ||| |||||| |||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |||||||| |||| | |
|
|
| T |
4622229 |
cttcaactccatggccttttgtctcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattg |
4622328 |
T |
|
| Q |
165 |
atttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgc |
264 |
Q |
| |
|
||||| || ||||||| |||| ||| || ||| ||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
4622329 |
atttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacacagcattgaaactccagcacatatgc |
4622428 |
T |
|
| Q |
265 |
tttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggtt |
322 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4622429 |
tttcggtggttgaattccatccacaatgagtcaagaatccaccaattgcagggtggtt |
4622486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 45 - 324
Target Start/End: Complemental strand, 4260219 - 4259940
Alignment:
| Q |
45 |
gtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcct |
144 |
Q |
| |
|
||||||||||| ||| | ||||||| |||||| || ||| ||||| ||||||||||| ||||| || | |||||||||||||||| ||||||| | |
|
|
| T |
4260219 |
gtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcat |
4260120 |
T |
|
| Q |
145 |
ctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacat |
244 |
Q |
| |
|
|||| |||||||| |||| ||||| || ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4260119 |
ctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacat |
4260020 |
T |
|
| Q |
245 |
tggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||| ||| | ||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||| | ||||| |||||||| |
|
|
| T |
4260019 |
tggaacttcggcacaaatgctttcaatggttgagttccatccgcaatgagttaagaatccaccaactgaagagtggttca |
4259940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4516372 - 4516667
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||||||||| |||| |||||| ||| ||||||||||||||||||| ||| ||||| |||||||||| |||||| | || |||||||||||| |
|
|
| T |
4516372 |
acaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcctcatcttctttcctttatctcccaccattaattcattgatc |
4516471 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||| |||| || | ||||||||| |||||||||| |
|
|
| T |
4516472 |
agcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccattcattgcaaatatatctgcaatttgttggctgctcagcaaaaa |
4516571 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||| |||||||| | || || |||||||| ||||||||||||||||| || | |||||| ||||||| |
|
|
| T |
4516572 |
aaggccaacacaacattggtactccggcacagatgctttccattgtggagttccatccacaatgagtcaagaatcctccaactgaaggatggttca |
4516667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 114 - 324
Target Start/End: Original strand, 4457730 - 4457940
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
4457730 |
atcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataaatctacaacttgttg |
4457829 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
||| |||| |||| |||||||||| || ||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
4457830 |
gcttatcaccaaagaatggccaacgcagcattggcactccagcgcatatgctttcagtggttgagtttcatccacaatgagtcaagaatcctccgattga |
4457929 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
4457930 |
agggtggttca |
4457940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 114 - 324
Target Start/End: Original strand, 4461259 - 4461469
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
|||||||| |||| || |||| ||||||| || |||||||||| | |||||||||| | ||||||| ||||| || |||||||||||||||| || || |
|
|
| T |
4461259 |
atcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatctcccatttgttgcaaataaatctacagtttgctg |
4461358 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
4461359 |
gctgatcaccaaagaatggccaacacaacatcggcactccagcacatatgctttcagtggttgaattccatccacaatgagtcaagaatccaccaattga |
4461458 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
4461459 |
agggtggttca |
4461469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 114 - 324
Target Start/End: Complemental strand, 4515117 - 4514907
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||| |||||||||| || ||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
4515117 |
atcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatctcccattcattgcaaataaatctacagtttgttg |
4515018 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
| |||||| |||| ||| ||||||| | ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
4515017 |
gttgatcaccaaagaattgccaacaaagcattggcactccagcgcatatgctctcagtggttgagttccatccgcaatgagtcaagaatccgccaattga |
4514918 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
4514917 |
agggtggttca |
4514907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 324
Target Start/End: Original strand, 3171825 - 3172087
Alignment:
| Q |
62 |
cttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgta |
161 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||| ||||| | |||||||| |||||||| ||| | |||||| ||||||| ||||| ||| |
|
|
| T |
3171825 |
cttcttcaactccatggccctttgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggta |
3171924 |
T |
|
| Q |
162 |
tcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacata |
261 |
Q |
| |
|
|| |||||||| |||||||||||||| | ||||||| ||||| || | ||| ||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
3171925 |
tcaatttccatcccaatcttccattcttggcaaataattctactgttaggtggttgatcagcaaaaaatggcctacacaacattggcattccagcacata |
3172024 |
T |
|
| Q |
262 |
tgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
3172025 |
cactttccgtggttgagttccatccgcagtgagtcaagaatccgccaattgaaggatggttca |
3172087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 93 - 322
Target Start/End: Original strand, 4557240 - 4557469
Alignment:
| Q |
93 |
ttctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattac |
192 |
Q |
| |
|
|||||||||| || || || ||||||||||||| || ||| | ||||| |||||||||||||| || || |||||||| ||||||| |||| ||| | |
|
|
| T |
4557240 |
ttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatctcccatgtattgc |
4557339 |
T |
|
| Q |
193 |
aaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatg |
292 |
Q |
| |
|
||||| |||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4557340 |
aaatatatctgcagtttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcagatatgctttcagtggttgagttccatccacaatg |
4557439 |
T |
|
| Q |
293 |
agtcaagaatccaccgattgaagggtggtt |
322 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |
|
|
| T |
4557440 |
agtcaagaatccaccaattgaaggatggtt |
4557469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 39 - 324
Target Start/End: Original strand, 4579493 - 4579778
Alignment:
| Q |
39 |
ggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcacca |
138 |
Q |
| |
|
||||| |||| ||||||| || ||||||||| || || ||| ||| ||||| |||||| ||| ||||| | ||||||||||| | ||||||| ||| |
|
|
| T |
4579493 |
ggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctcca |
4579592 |
T |
|
| Q |
139 |
cctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaaca |
238 |
Q |
| |
|
||||||||||||||||||| || |||||||| || ||||| |||||| ||| || | | |||| ||| | ||| |||||||| |||||||||||||| |
|
|
| T |
4579593 |
cctcctctctcttcacattagtgtcgatttcaattccaattttccatgtattgcataaatatctgcagcttactgggtgatcagcgaaaaatggccaaca |
4579692 |
T |
|
| Q |
239 |
caacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4579693 |
caacattggaactccagcagatatgctttcagtgattgagttccatccgcaatgagtcaagaatccaccaattgaagggtggttca |
4579778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 144 - 319
Target Start/End: Original strand, 4506023 - 4506198
Alignment:
| Q |
144 |
tctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaaca |
243 |
Q |
| |
|
||||| |||||||| ||||| ||||| || ||||||| | ||||||| |||||||||||||||| |||||| |||||| |||| || |||||||||| || |
|
|
| T |
4506023 |
tctctattcacattagtatcaatttcgattccaatctccaattcattgcaaataaatctacagtttgttggttgatcaccaaagaacggccaacacagca |
4506122 |
T |
|
| Q |
244 |
ttggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtg |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4506123 |
ttggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccaattgaagggtg |
4506198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 4571023 - 4571318
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| |||||||| ||||| ||| ||||| |||||||||| |||||| | ||||||||||||| | |
|
|
| T |
4571023 |
acaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatcttctttcctttatctcccaccatcaattcattgacc |
4571122 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
| ||| ||||||| | |||||||||||| ||||||||||| || ||||||| |||| ||| || ||| ||||||||| || ||||||||||||||||| |
|
|
| T |
4571123 |
aaattctccacctcatttctcttcacattagtatcgatttcgattccaatctcccatgtattgcagatatatctacagtttgctggctgatcagcaaaaa |
4571222 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||| ||||||||||||| ||||||| | |||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
4571223 |
atggctaacacaacattggaactccagtagatatgctttcggtcgttgagttccatccacagtgagtcaagaaaccaccaattgaaggatggttca |
4571318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 87 - 322
Target Start/End: Original strand, 4598280 - 4598515
Alignment:
| Q |
87 |
ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt |
186 |
Q |
| |
|
||||| |||||||||| |||||| |||||||| |||| ||||||| |||||||||||||||||||||| || || |||| || ||||||| ||||| |
|
|
| T |
4598280 |
ctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccatt |
4598379 |
T |
|
| Q |
187 |
cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatcc |
286 |
Q |
| |
|
|||| |||||| |||| |||| | | ||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
4598380 |
cattgcaaatatatctgcagttggcttgctgatccgcgaaaaagggacaacacaacattggcactccggcacatatactttcagtggttgagttccatcc |
4598479 |
T |
|
| Q |
287 |
gcaatgagtcaagaatccaccgattgaagggtggtt |
322 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
4598480 |
gcaatgagttaagaatccaccaattgaaggatggtt |
4598515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 62 - 324
Target Start/End: Complemental strand, 4490403 - 4490141
Alignment:
| Q |
62 |
cttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgta |
161 |
Q |
| |
|
||||||||| ||| | ||| ||| ||||| |||||||||| ||||| | ||||||||||||||||| ||| | ||||| |||||||| ||||| ||| |
|
|
| T |
4490403 |
cttcttcaactccgtcgccttttgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggta |
4490304 |
T |
|
| Q |
162 |
tcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacata |
261 |
Q |
| |
|
|| |||| ||| ||||||| |||||| | ||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4490303 |
tcaattttcatcccaatctcccattcttcgcaaataattctactgctaagtggttgatcagcaaaaaatggccaacacaacattggcactccagcacata |
4490204 |
T |
|
| Q |
262 |
tgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
| || || || |||| |||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4490203 |
tactctccatgattgagttccatccacaatgagtcaagaatccaccaattgaagggtgattca |
4490141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 4504478 - 4504183
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||| |||| |||| |||||| ||| ||||||||| ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||| || |
|
|
| T |
4504478 |
acaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttttgcctcatcttctttcctttctctcccaccatcaattcattaata |
4504379 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|| ||| | ||||| ||||||| ||||| | ||| || | ||| ||||||| |||||| | ||||||| | | | ||||||||||| ||||| |
|
|
| T |
4504378 |
agtttctctacctcttctctctgtacattggcatcaatcttcatcccaatctcccattcttcgcaaataatgttgctattaagtggctgatcagaaaaaa |
4504279 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4504278 |
atggccaacacaacattggcactccagcacaaacactttcagtggttgagttccatccacaatgagtcaagaatcctccgattgaagggtggttca |
4504183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 324
Target Start/End: Original strand, 4568195 - 4568402
Alignment:
| Q |
117 |
aattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggct |
216 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||| || || |||| | | | |||||||||| |||| |||| |||||||| |
|
|
| T |
4568195 |
aattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattacaaatatatctgcagtatgttggct |
4568294 |
T |
|
| Q |
217 |
gatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagg |
316 |
Q |
| |
|
| |||| |||||| |||||||| |||||||| |||| ||||| |||||||| || || |||||||| |||||||||||||||| || | |||||| |
|
|
| T |
4568295 |
gctcagaaaaaaaaggccaacataacattggtactctggcacaaatgctttccaatgtggagttccatccacaatgagtcaagaatcgtccaactgaagg |
4568394 |
T |
|
| Q |
317 |
gtggttca |
324 |
Q |
| |
|
|||||||| |
|
|
| T |
4568395 |
gtggttca |
4568402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 160 - 324
Target Start/End: Original strand, 4493137 - 4493301
Alignment:
| Q |
160 |
tatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcaca |
259 |
Q |
| |
|
|||||||||| | ||||||| | ||||||| ||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
4493137 |
tatcgatttctactccaatctccaattcattgcaaatcaatctacagtttgttggctgatcactaaagaaaggccaacacaacattggcactccggcaca |
4493236 |
T |
|
| Q |
260 |
tatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
|||| ||| || ||||| |||||||| |||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
4493237 |
tatgtttttggtagttgagttccatccacaatgagtcaagaatccaccaatcgaatggtggttca |
4493301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 4299742 - 4299671
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccat |
185 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||| |||| |
|
|
| T |
4299742 |
atcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaatctcccat |
4299671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 4299673 - 4299607
Alignment:
| Q |
258 |
catatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
|||||||||||| ||||||| |||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4299673 |
catatgctttcaatggttgagttccatccacagtgagtcaagaatccaccaattgaagggtggttca |
4299607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 1674277 - 1674572
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||| || ||||| | ||||| | |||||||||||||| |
|
|
| T |
1674277 |
acaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttgcctcatcttttttccattctctcccaccatcaattcattgata |
1674376 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1674377 |
agcttctccaaaccctctctcttcacattcgtatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaa |
1674476 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
1674477 |
atggccaacacaacattggcactccagcgcatatgctttcagtggttgagttccatccgcagtgtgtcaagaatccgccgattgaagggtggttca |
1674572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 322
Target Start/End: Complemental strand, 16686290 - 16686055
Alignment:
| Q |
87 |
ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt |
186 |
Q |
| |
|
||||| |||||||||| ||||| | ||||||||||||| || ||| ||||||| |||||||||||||| || || |||||||| ||||||| ||||| |
|
|
| T |
16686290 |
ctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccatt |
16686191 |
T |
|
| Q |
187 |
cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatcc |
286 |
Q |
| |
|
|||| |||||| |||| || | || |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
16686190 |
cattgcaaatatatctgcattttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcatatatactttcagtggttgagttccatcc |
16686091 |
T |
|
| Q |
287 |
gcaatgagtcaagaatccaccgattgaagggtggtt |
322 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |
|
|
| T |
16686090 |
acaatgagttaagaatccaccgattgaaggatggtt |
16686055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 324
Target Start/End: Complemental strand, 20863839 - 20863629
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||| | |||| || |||||||||||||||| ||||| || || ||||| || ||||||| ||||| || ||||| |||| |||| ||| | |
|
|
| T |
20863839 |
atcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatctcccatttgttgcaaatgtatctgcagtttgtcg |
20863740 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||| | |||||||| ||||| |
|
|
| T |
20863739 |
gctgatcagcaaaaaatggccagcacaacattggcactccagcacatatgctctcaatggttgagttccatccacaatgagttagaaatccaccaattga |
20863640 |
T |
|
| Q |
314 |
agggtggttca |
324 |
Q |
| |
|
||| ||||||| |
|
|
| T |
20863639 |
aggatggttca |
20863629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 1969181 - 1969140
Alignment:
| Q |
272 |
ggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
1969181 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
1969140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 28000180 - 27999885
Alignment:
| Q |
29 |
acaaccacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatc |
128 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||| ||||| || ||||| | ||||| | |||||||||||||| |
|
|
| T |
28000180 |
acaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatcttttttccattctctcccaccatcaattcattgata |
28000081 |
T |
|
| Q |
129 |
agcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaa |
228 |
Q |
| |
|
|||||| ||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28000080 |
agcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaa |
27999981 |
T |
|
| Q |
229 |
atggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || | ||||||||||||||||| |
|
|
| T |
27999980 |
atgaccaacacaacattggcactccagcgcatatgctttcggtggttgagttccatccgcagtgagtcaagaacccgctgattgaagggtggttca |
27999885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 114 - 322
Target Start/End: Original strand, 24103135 - 24103343
Alignment:
| Q |
114 |
atcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttg |
213 |
Q |
| |
|
||||||||||||| | |||| | || || |||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
24103135 |
atcaattcattgactaacttctcgacgtcatctctcttcacatttgtatcgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttg |
24103234 |
T |
|
| Q |
214 |
gctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattga |
313 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || |
|
|
| T |
24103235 |
gttgatcaccaaagaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccaatcga |
24103334 |
T |
|
| Q |
314 |
agggtggtt |
322 |
Q |
| |
|
||||||||| |
|
|
| T |
24103335 |
agggtggtt |
24103343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 320
Target Start/End: Complemental strand, 3797 - 3509
Alignment:
| Q |
32 |
accacctggtctagtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagc |
131 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || |||| |||| ||| ||||| |||||||||| ||||| | |||||||||||| ||| |
|
|
| T |
3797 |
accacctggtctagtgttctcctctgccttcttctttaactccacggccttttgcctcatcttctttcctttctctcccaccgtcaattcattgactagc |
3698 |
T |
|
| Q |
132 |
ttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatg |
231 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||||||| | ||||||| |||||| || |||||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
3697 |
ttctccacctcatctctcttcacatccatatcgatttcaagtccaatctcccattcgttgcaaataaatctacagtttgttggctgatcaccaaagaatg |
3598 |
T |
|
| Q |
232 |
gccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtgg |
320 |
Q |
| |
|
||||||| | |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
3597 |
gccaacaaagcattggtactccagcgcatatgctttcagtggttgaattccatccacaatgagtcaagaatccaccaattgaagggtgg |
3509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 324
Target Start/End: Complemental strand, 4751 - 4472
Alignment:
| Q |
45 |
gtgttctcctccgccgccttcttcaattccatggccctttctctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcct |
144 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||| ||| ||||| ||| |||||| |||||| |||||||||||||||| ||| |||| || |
|
|
| T |
4751 |
gtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcccgacatcaattcattgatcatattcgttaccttct |
4652 |
T |
|
| Q |
145 |
ctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacat |
244 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||| |||| || | ||| | | | ||| |||||||||||| || |||||||||||||||||||| |
|
|
| T |
4651 |
ctctcttcacattagtatcaatttccataccagtctcccatatatgggagatataccgatagtttgttggctgatcggcgaaaaatggccaacacaacat |
4552 |
T |
|
| Q |
245 |
tggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4551 |
tggcactcctacacatatgctttcaatggttgagttccatccgcaatgagtcaagaatccaccaattgaagggtggttca |
4472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 324
Target Start/End: Original strand, 3086529 - 3086766
Alignment:
| Q |
87 |
ctcatattctttccttcatctccgtctatcaattcattgatcagcttcaccacctcctctctcttcacatttgtatcgatttccataccaatcttccatt |
186 |
Q |
| |
|
||||| |||||||||| |||||| | ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
3086529 |
ctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccata |
3086628 |
T |
|
| Q |
187 |
cattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgaattccatcc |
286 |
Q |
| |
|
||| || ||| ||||||||| | |||| ||||| || |||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||| |
|
|
| T |
3086629 |
tattgcagatatatctacagtttattggttgatctccataaaatggccaacacaacattggcactccagcaagtacgctttcaaccgttgagttccatcc |
3086728 |
T |
|
| Q |
287 |
gcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3086729 |
acaatgagtcaagaatccaccaattgaagggtgattca |
3086766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 3658 - 3471
Alignment:
| Q |
136 |
ccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggcca |
235 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||| | ||||||| ||||||||| ||||| ||||||||| ||||| || || | ||||||||||| |
|
|
| T |
3658 |
ccacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaatgcatctacagtttgttgagtgttcggggaaaaatggcca |
3559 |
T |
|
| Q |
236 |
acacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccgattgaagggtggttca |
324 |
Q |
| |
|
|| || |||||| ||||||| ||| ||||||||| ||||||| |||||||| |||||||| ||||||||||| | | |||||||||||| |
|
|
| T |
3558 |
acgcagcattggaactccagaacaaatgctttcaatggttgagttccatccacaatgagttaagaatccaccaact-aagggtggttca |
3471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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