View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_27 (Length: 313)

Name: NF0553_low_27
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_27
NF0553_low_27
[»] chr7 (17 HSPs)
chr7 (92-313)||(15873233-15873453)
chr7 (92-313)||(10288047-10288268)
chr7 (92-313)||(11035641-11035860)
chr7 (92-313)||(13163530-13163751)
chr7 (137-313)||(22078356-22078531)
chr7 (137-313)||(12911034-12911209)
chr7 (137-276)||(12196057-12196195)
chr7 (137-313)||(40106540-40106715)
chr7 (137-286)||(48653131-48653278)
chr7 (137-313)||(49169641-49169817)
chr7 (141-313)||(9994051-9994220)
chr7 (210-313)||(18366701-18366804)
chr7 (210-309)||(21490863-21490962)
chr7 (235-313)||(9554543-9554621)
chr7 (249-313)||(24056671-24056735)
chr7 (210-242)||(1322294-1322326)
chr7 (92-162)||(24053092-24053164)
[»] chr6 (10 HSPs)
chr6 (92-313)||(34636916-34637136)
chr6 (92-313)||(10750886-10751106)
chr6 (92-313)||(32449523-32449743)
chr6 (97-313)||(26181955-26182170)
chr6 (92-313)||(23259887-23260128)
chr6 (150-313)||(13772725-13772887)
chr6 (210-313)||(24164520-24164623)
chr6 (210-294)||(20559542-20559625)
chr6 (235-309)||(11166052-11166126)
chr6 (245-313)||(31275943-31276011)
[»] chr5 (10 HSPs)
chr5 (92-313)||(537549-537769)
chr5 (92-276)||(6309461-6309644)
chr5 (137-313)||(42862103-42862277)
chr5 (137-276)||(40691641-40691781)
chr5 (137-313)||(38001708-38001883)
chr5 (137-277)||(30910523-30910662)
chr5 (241-313)||(23211178-23211249)
chr5 (92-204)||(42640267-42640376)
chr5 (95-162)||(27027155-27027223)
chr5 (137-223)||(4557364-4557450)
[»] scaffold0657 (1 HSPs)
scaffold0657 (92-313)||(1595-1815)
[»] chr3 (13 HSPs)
chr3 (92-313)||(16976047-16976267)
chr3 (92-313)||(5003987-5004206)
chr3 (92-313)||(46403855-46404077)
chr3 (94-313)||(7335952-7336169)
chr3 (95-313)||(43277302-43277520)
chr3 (137-310)||(9104829-9105001)
chr3 (210-312)||(8731472-8731575)
chr3 (210-312)||(9083359-9083462)
chr3 (210-276)||(11937263-11937329)
chr3 (235-309)||(5704648-5704722)
chr3 (235-305)||(1461494-1461564)
chr3 (92-162)||(37979833-37979904)
chr3 (244-313)||(17542113-17542182)
[»] chr2 (15 HSPs)
chr2 (92-313)||(40448210-40448429)
chr2 (95-313)||(34397115-34397333)
chr2 (92-313)||(44789235-44789454)
chr2 (137-313)||(40728733-40728907)
chr2 (137-313)||(18292047-18292221)
chr2 (137-313)||(35670071-35670245)
chr2 (137-281)||(41339556-41339700)
chr2 (207-313)||(12773805-12773911)
chr2 (210-286)||(29271339-29271415)
chr2 (235-309)||(23827789-23827863)
chr2 (235-312)||(28266551-28266628)
chr2 (92-153)||(28266408-28266470)
chr2 (237-276)||(11387707-11387746)
chr2 (204-232)||(27976402-27976430)
chr2 (204-232)||(28062930-28062958)
[»] chr1 (16 HSPs)
chr1 (92-313)||(338837-339056)
chr1 (92-313)||(43406625-43406844)
chr1 (109-313)||(37666454-37666656)
chr1 (92-313)||(35761287-35761508)
chr1 (141-313)||(18472249-18472419)
chr1 (137-313)||(6836624-6836799)
chr1 (186-313)||(8422285-8422412)
chr1 (235-313)||(24276115-24276192)
chr1 (235-305)||(24055667-24055736)
chr1 (238-313)||(19198203-19198280)
chr1 (92-162)||(25647809-25647880)
chr1 (235-313)||(33007051-33007129)
chr1 (235-310)||(33009123-33009198)
chr1 (218-276)||(16075468-16075527)
chr1 (235-276)||(16111136-16111177)
chr1 (95-169)||(19198065-19198137)
[»] scaffold0413 (1 HSPs)
scaffold0413 (92-313)||(161-381)
[»] chr4 (8 HSPs)
chr4 (97-313)||(40459680-40459894)
chr4 (92-313)||(28968494-28968716)
chr4 (92-275)||(70066-70247)
chr4 (150-313)||(55162920-55163082)
chr4 (147-275)||(49499822-49499950)
chr4 (96-310)||(2761356-2761565)
chr4 (235-309)||(10276781-10276855)
chr4 (132-238)||(34828064-34828169)
[»] chr8 (11 HSPs)
chr8 (124-276)||(22815622-22815774)
chr8 (110-276)||(44436867-44437031)
chr8 (137-313)||(6150248-6150424)
chr8 (92-286)||(40840782-40840975)
chr8 (137-313)||(41957762-41957935)
chr8 (236-313)||(35840879-35840955)
chr8 (235-309)||(12659338-12659412)
chr8 (96-162)||(35841029-35841096)
chr8 (235-306)||(10250975-10251046)
chr8 (95-131)||(22640699-22640735)
chr8 (204-232)||(21231121-21231149)
[»] scaffold0041 (1 HSPs)
scaffold0041 (110-313)||(32624-32822)
[»] scaffold1838 (1 HSPs)
scaffold1838 (150-270)||(958-1077)
[»] scaffold0120 (1 HSPs)
scaffold0120 (235-309)||(2122-2196)
[»] scaffold0013 (2 HSPs)
scaffold0013 (92-169)||(240908-240983)
scaffold0013 (218-286)||(242428-242496)
[»] scaffold0002 (1 HSPs)
scaffold0002 (235-309)||(356362-356436)
[»] scaffold0069 (1 HSPs)
scaffold0069 (235-309)||(11430-11504)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 15873233 - 15873453
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873233 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 15873332  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15873333 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 15873431  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  15873432 ccacaaaatagatagtatcaaa 15873453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 10288047 - 10288268
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaa-atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaa 190  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  10288047 aattaaaactcttaaactaatatccttcaaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaa 10288146  T
Q  191 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaat 290  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10288147 cttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaat 10288245  T
Q  291 gccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||    
T  10288246 gccacaaaatagatagtatcaaa 10288268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 11035641 - 11035860
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||| |||||||||    
T  11035641 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattttgtcccc-gtacgcacttcaagcaaaaac 11035739  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11035740 ttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 11035838  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  11035839 ccacaaaatagatagtatcaaa 11035860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 13163530 - 13163751
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||  |||||| | |||||||    
T  13163530 aattaaaactcttaaactaatatccttcaaaaatttctattaaagttacaattcaatcaaaaacccaattttgtccctcgtacgcacttcaaacaaaaac 13163629  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaat 290  Q
    |||||| |||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||    
T  13163630 ttcaaagcatagaccatctattctttggtatctaaaatattagtgtaagggtcaatttccttaaccaaattggttcatactc-aaagcaccagaaacaat 13163728  T
Q  291 gccacaaaatagatagtatcaaa 313  Q
    | || ||| |||||| |||||||    
T  13163729 gtcataaattagataatatcaaa 13163751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 22078531 - 22078356
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| || ||||||||||| | ||||||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  22078531 ttacaattcgattaaaaacccaatat-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtg 22078433  T
Q  237 taagggtcaatttccttatccaaattggttcat-actcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  22078432 taagggtcaatttccttatccaaattggttcataactc-aaagtacaagaacaatgccacaaaatagatagtatcaaa 22078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 12911034 - 12911209
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||    
T  12911034 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatatctgctttggtacctaaaatattagtg 12911132  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||||    
T  12911133 taagggtcaattttcttatccaaattggttcatactc-aaagcacaagaaacaatgtcataaaatagatagtatcaaa 12911209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 12196057 - 12196195
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  12196057 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagtatagaccatctcttctttggtacctaaaatgttagtg 12196155  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  12196156 taagagtcaatttccttatccaaattggttcatactcaaa 12196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 40106715 - 40106540
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| |||||||| ||||||| ||||||||||  |||||| ||||||||||||||| ||||||  |||||||||| |||||||||||| ||| ||    
T  40106715 ttacaattcgatcaaaaatccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatctcttcttaggtacctaaaattttaatg 40106617  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||||    
T  40106616 taagggtcaatttccatatccaaattggttcatactc-aaagcacaagaaacaatgtcataaaatagatagtatcaaa 40106540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 48653131 - 48653278
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    ||||||||| || ||||||||||||| ||||||| |||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||| |    
T  48653131 ttacaattcgat-aaaaacccaattt-gtcccccggtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattaat 48653228  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaa 286  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48653229 gtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaa 48653278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 49169641 - 49169817
Alignment:
Q  137 ttacaattcaa-tcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    ||||||||||| | |||||| |||||| ||||| ||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |    
T  49169641 ttacaattcaaataaaaaactcaattt-gtcccacgtacgcacttcaagcaaaaacttcaaatcatagaacatctcttctttggtacctaaaatgttaat 49169739  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||| |||||||||| ||||||||||||||||||||||| ||||||| || ||||||| || |||||||||| |||||||    
T  49169740 gtaggggtcaattttcttatccaaattggttcatactc-aaagcaccagaaacaatgtcataaaatagataatatcaaa 49169817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 141 - 313
Target Start/End: Complemental strand, 9994220 - 9994051
Alignment:
Q  141 aattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaag 240  Q
    |||| ||| ||||||||||||||||||||     || |||| |||||||||  |||| |||| | ||| ||||||||| |||||||||||||||||| ||    
T  9994220 aatttaattaaaaacccaatttcgtccccgc---acgcttcaagcaaaaacaccaaagcatacaccatgtcttctttgatacctaaaatgttagtgttag 9994124  T
Q  241 ggtc-aatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    || | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9994123 gggccaatttccttatccaaattggttcatactcaaa-gcacaagaacaatgccacaaaatagatagtatcaaa 9994051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 18366701 - 18366804
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| || |||||||||||||    
T  18366701 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaaacaatgtcataaaatagatagta 18366799  T
Q  309 tcaaa 313  Q
    |||||    
T  18366800 tcaaa 18366804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 21490863 - 21490962
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||    
T  21490863 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgtcataaaatagatagta 21490961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 9554543 - 9554621
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||| |||||||  | ||| ||||||||||||||    
T  9554543 tgtaagggtcaattttcttatctaaactggttcatactc-aaagcacaagaaacaatgttataaagtagatagtatcaaa 9554621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 24056671 - 24056735
Alignment:
Q  249 tccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||| ||||||||| ||||||| || ||||||| || |||||||||| |||||||    
T  24056671 tccttatccaaattgattcatactc-aaagcactagaaacaatgtcataaaatagataatatcaaa 24056735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 1322294 - 1322326
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaaggg 242  Q
    ||||||||||||||||||||||| |||||||||    
T  1322294 tcttctttggtacctaaaatgttggtgtaaggg 1322326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 24053092 - 24053164
Alignment:
Q  92 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatc-aaaaacccaattt 162  Q
    |||||||| ||||||||||| |||||||||||||| |||  | ||||| ||||| |||| |||||||||||||    
T  24053092 aattaaaattcttaaattaaatatccttcaaaaatctcttatgaagttgcaattaaatcaaaaaacccaattt 24053164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 34637136 - 34636916
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34637136 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaatccaatttcgtcccccgtatacacttccagcaaaaac 34637037  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  34637036 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaacaatg 34636938  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  34636937 ccacaaaatagatagtatcaaa 34636916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 10750886 - 10751106
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  10750886 aattaaaactcttaaactaatatcattcaaaaatttctactgaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaac 10750985  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10750986 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 10751084  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||| ||||||||||||||||    
T  10751085 ccacataatagatagtatcaaa 10751106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 32449523 - 32449743
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| | | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||    
T  32449523 aattaaaactcttaaacttaaatccttcaaaaatttctacctaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaagaac 32449622  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32449623 ttcaatgcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 32449721  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  32449722 ccacaaaatagatagtatcaaa 32449743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 26181955 - 26182170
Alignment:
Q  97 aaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaa 196  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||  |||||| ||||||||||||||    
T  26181955 aaactcttaaactaatatccttcaaaagtttctactaaagttacaattcaatcaaaaacccaattttgttccccgtacgcacttcaagcaaaaacttcaa 26182054  T
Q  197 aacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccaca 296  Q
    | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||| ||      
T  26182055 agcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcaaaattggttcatactc-aaagcaccggaacaatgtcatg 26182153  T
Q  297 aaatagatagtatcaaa 313  Q
    ||||||||| |||||||    
T  26182154 aaatagataatatcaaa 26182170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 23259887 - 23260128
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaa-atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaa 190  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  23259887 aattaaaactcttaaactaatatccttcaaaaaatttctactaaagttacaattcaatcaaaaacccaatttcatcccccgtacgcacttcaagcaaaaa 23259986  T
Q  191 cttcaaaacatagatcatc--------------------tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcata 270  Q
    ||||||| |||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259987 cttcaaagcatagatcatctcttctttggtacctaaaattcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcata 23260086  T
Q  271 ctcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  23260087 ctc-aaagcacaagaacaatgccacaaaatagatagtatcaaa 23260128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 313
Target Start/End: Original strand, 13772725 - 13772887
Alignment:
Q  150 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 249  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  13772725 aaaaacccaattt-gtcccccgtacgcacttctagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagagtcaattt 13772823  T
Q  250 ccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||| |||||||||| ||||||| || || ||||||| |||||||    
T  13772824 ccttatccaaattggttcatactc-aaagcacaagaaacaatgtcataatatagataatatcaaa 13772887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 24164623 - 24164520
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagta 308  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  24164623 tcttatttggtacctaaaatgttggtgtaaggggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgtcataaaatagatagta 24164525  T
Q  309 tcaaa 313  Q
    |||||    
T  24164524 tcaaa 24164520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 20559625 - 20559542
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgcca 294  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  20559625 tcttctttgatacctaaaatgttactgtaagggtcaatttctttatccaaattggttcatactc-aaagcacaagaacaatgcca 20559542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 11166052 - 11166126
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaa-gaacaatgccacaaaatagatagtat 309  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||  ||||||||   ||||||||||||||    
T  11166052 tgtaagggtcaatttccgtatccaaattggttcatact-gaaagcacaataaacaatgctctaaaatagatagtat 11166126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 31275943 - 31276011
Alignment:
Q  245 aatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||||||| |||| ||| || || |||| || |||||||||| |||||||    
T  31275943 aatttccttatccaaattggttcatacttaaaa-cacgagaaataatgtcataaaatagataatatcaaa 31276011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 537769 - 537549
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  537769 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatgcacttccagcaaaaac 537670  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  537669 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaacaatg 537571  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  537570 ccacaaaatagatagtatcaaa 537549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 6309644 - 6309461
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaa 190  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||    
T  6309644 aattaaaactc--aaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattttgtccccccgtatgcacttcaagcaaaaa 6309547  T
Q  191 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6309546 cttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 6309461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 42862277 - 42862103
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    |||||||||||||||||| ||||||| ||||||||||  |||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  42862277 ttacaattcaatcaaaaatccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatattagtg 42862179  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||||| | ||||||| || ||||||||||||||||||    
T  42862178 taagggtcaattttcttatccaaattagtttatactc-aaagcaccaaaacaatgtcataaaatagatagtatcaaa 42862103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 137 - 276
Target Start/End: Complemental strand, 40691781 - 40691641
Alignment:
Q  137 ttacaattcaa-tcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    ||||||||||| |||||||| ||||||  |||||||||  |||||| ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||    
T  40691781 ttacaattcaaatcaaaaactcaatttgttcccccgtacgcacttcaagcaaaaactttaaagcatagaccatatcttctttggtacctaaaatgttagt 40691682  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40691681 gtaagggtcaatttccttatccaaattggttcatactcaaa 40691641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 38001883 - 38001708
Alignment:
Q  137 ttacaattcaatcaaaaa-cccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    ||||||||| |||||||| |||||||| ||||| ||||  |||||| ||||||||||||||| |||||| ||||||||||||| |||||||||| |||||    
T  38001883 ttacaattcgatcaaaaaacccaattt-gtccctcgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttgatacctaaaatattagt 38001785  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||| | |||||||||||||||||||||||||||| ||||| ||| | ||||||| || ||||||||||||||||||    
T  38001784 gtaagagccaatttccttatccaaattggttcatacacaaaa-caccaaaacaatgtcataaaatagatagtatcaaa 38001708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 277
Target Start/End: Complemental strand, 30910662 - 30910523
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| |||||||||||||||| || || ||||  |||||  ||||||||||||||| |||| | |||||||||||| ||||||||||| ||||||    
T  30910662 ttacaattcgatcaaaaacccaattt-gttcctcgtacgcactttaagcaaaaacttcaaagcataaaccatctcttctttcgtacctaaaatattagtg 30910564  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaa 277  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30910563 taagggtcaatttccttatccaaattggttcatactcaaaa 30910523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 23211249 - 23211178
Alignment:
Q  241 ggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  23211249 ggtcaatttccttatccaaattggttcatactc-aaagcacaataacaatgccacaaagtagatagtatcaaa 23211178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 42640376 - 42640267
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||| |||| ||||||| |||||  |||||| |||||||||    
T  42640376 aattaaaattcttaaattaatatccttc-aaaattacttctaaaattacaattcaat-aaaaatccaa-ttcgtccaccgtacgcacttcaagcaaaaac 42640280  T
Q  192 ttcaaaacataga 204  Q
    |||||| ||||||    
T  42640279 ttcaaagcataga 42640267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 27027223 - 27027155
Alignment:
Q  95 taaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 162  Q
    ||||| ||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27027223 taaaattcttaaaataattatacttcaaaaatttcttctaaagttacaattcaatcaaaaacccaattt 27027155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 4557364 - 4557450
Alignment:
Q  137 ttacaattca-atcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacc 223  Q
    |||||||||| |||||||||||||||| ||||||||||  |||||| | ||||||||||||| |||||| ||||||||| ||||||||    
T  4557364 ttacaattcatatcaaaaacccaattt-gtcccccgtacgcacttcaaacaaaaacttcaaagcatagaccatctcttcattggtacc 4557450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 1595 - 1815
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1595 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatgcacttccagcaaaaac 1694  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1695 ttcaaagtatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatac-ccaaagcacaagaacaatg 1793  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  1794 ccacaaaatagatagtatcaaa 1815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 16976267 - 16976047
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||||    
T  16976267 aattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaactcaatttcgtcccccgtacgcacttcaagcaaaaac 16976168  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16976167 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaa-cacaagaacaatg 16976069  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  16976068 ccacaaaatagatagtatcaaa 16976047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 5003987 - 5004206
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  5003987 aattaaaactcttaact-aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaac 5004085  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5004086 ttcaaagcatagatcatctcttatttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaata 5004184  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  5004185 ccacaaaatagatagtatcaaa 5004206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 46403855 - 46404077
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaa--atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaa 189  Q
    |||||||||||||| | |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  46403855 aattaaaactcttatactaatatccttcaaaataattactactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaa 46403954  T
Q  190 acttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaa 289  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46403955 acttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaa 46404053  T
Q  290 tgccacaaaatagatagtatcaaa 313  Q
    ||||| ||||||||||||||||||    
T  46404054 tgccataaaatagatagtatcaaa 46404077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 94 - 313
Target Start/End: Original strand, 7335952 - 7336169
Alignment:
Q  94 ttaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaactt 193  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||    
T  7335952 ttaaaactcgtaaactaagatccttcaaaa-tttctactaaagttacaattcaatcacaaacccaatttcgtcccccgtacgcacttcaagcaaaaactt 7336050  T
Q  194 caaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgcc 293  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7336051 caaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgcc 7336149  T
Q  294 acaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||    
T  7336150 acaaaatagatagtatcaaa 7336169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 95 - 313
Target Start/End: Original strand, 43277302 - 43277520
Alignment:
Q  95 taaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaactt 193  Q
    ||||| ||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||| || || |||||||  |||||| |||||||||      
T  43277302 taaaattcttaaaataattatccttcaaaaatttattctaaagttacaattcaatcaaaaacccaactt-gttccccgtacgcacttcaagcaaaaacac 43277400  T
Q  194 caaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagca-caagaacaatgc 292  Q
    ||||  ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||     
T  43277401 caaagtatagaccatctcttctttagtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcaccataaacaatgt 43277499  T
Q  293 cacaaaatagatagtatcaaa 313  Q
    || ||||||||||||||||||    
T  43277500 cataaaatagatagtatcaaa 43277520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 137 - 310
Target Start/End: Complemental strand, 9105001 - 9104829
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| ||  |||||||||||| ||||||||||  |||||| |||| |||||||||| ||||||  ||||||||||||||||||||||| ||||||    
T  9105001 ttacaattcgatttaaaacccaattt-gtcccccgtacgcacttcaagcagaaacttcaaagcatagacaatctcttctttggtacctaaaatattagtg 9104903  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatc 310  Q
     |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  9104902 caaggatcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgccataaaataaatagtatc 9104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 8731575 - 8731472
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagt 307  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  8731575 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgccataaaatagatagt 8731477  T
Q  308 atcaa 312  Q
    |||||    
T  8731476 atcaa 8731472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 9083462 - 9083359
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagt 307  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  9083462 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgccataaaatagatagt 9083364  T
Q  308 atcaa 312  Q
    |||||    
T  9083363 atcaa 9083359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 11937263 - 11937329
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  11937263 tcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttcatattcaaa 11937329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 5704722 - 5704648
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  5704722 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 5704648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 1461564 - 1461494
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagata 305  Q
    |||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||    
T  1461564 tgtaagagtcaatttccttatccaaattagttcatactc-aaagcacaagaaacaatgccctaaaatagata 1461494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 37979904 - 37979833
Alignment:
Q  92 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 162  Q
    |||||||| ||||||||||| |||||||||||||| | | |||||||| ||||| |||||||||||||||||    
T  37979904 aattaaaattcttaaattaaatatccttcaaaaatctattctaaagttgcaattaaatcaaaaacccaattt 37979833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 17542113 - 17542182
Alignment:
Q  244 caatttccttatccaaattggttcatactcaaaagca-caagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||| |||||||||| |||||| ||  ||||||| || |||||||||| |||||||    
T  17542113 caatttccttatccaaattagttcatactc-aaagcaccataaacaatgtcataaaatagataatatcaaa 17542182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 40448429 - 40448210
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  40448429 aattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccccgtaagcacttcaagcaaaaac 40448331  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40448330 ttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 40448232  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  40448231 ccacaaaatagatagtatcaaa 40448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 95 - 313
Target Start/End: Original strand, 34397115 - 34397333
Alignment:
Q  95 taaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttc 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||| || |||||||   ||||| ||||||||||||    
T  34397115 taaaactcttaaactaatatccttcaaaaatttctactaaagttacattccaatcaaaaactcaattttgttccccgtacgtacttcaagcaaaaacttc 34397214  T
Q  195 aaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgcc 293  Q
    ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| |    
T  34397215 aaagctcagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttattcaaattgattcatactc-aaagcaccagaaacaatgtc 34397313  T
Q  294 acaaaatagatagtatcaaa 313  Q
    |  ||||||||| |||||||    
T  34397314 atgaaatagataatatcaaa 34397333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 44789454 - 44789235
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||  |||  ||||||  |||| |||    
T  44789454 aattaaaactcttaaactaatatccttcaaaagtttctactaaagttacaattcaattaaaaacccaattttgtcccatgtacgcacttcaggcaataac 44789355  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaat 290  Q
    |||||| |||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||| ||    
T  44789354 ttcaaagcatagacca--tcttctttggtacctaaaatgttagtgtgagggtcaatttccttatccaaattggttcatactc-aaagcacaggaaactat 44789258  T
Q  291 gccacaaaatagatagtatcaaa 313  Q
    | || |||||||||| |||||||    
T  44789257 gtcataaaatagataatatcaaa 44789235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 40728733 - 40728907
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||    
T  40728733 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagactatctcttctttggtacctaaaatattagtg 40728831  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||| || ||||||||||||||||||    
T  40728832 taagggtcaatttccttattcaaattggttcatactc-aaagcaccaaaacaatgtcataaaatagatagtatcaaa 40728907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 18292047 - 18292221
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| ||||||| ||||||||  |||||| ||| |||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  18292047 ttacaattcgatcaaaa-cccaattta-tcccccatatgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatgttagtg 18292144  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| ||  ||||||||| |||||||    
T  18292145 taagggtcaatttccttatccaaattggttcatcctc-aaagcaccagaaacaatgtcatgaaatagataatatcaaa 18292221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 35670071 - 35670245
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| || ||||||| ||||| |||||||| |  |||||| ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||    
T  35670071 ttacaattcgat-aaaaacctaattt-gtcccccgaacgcacttcaagcaaaaacttcaaagcatataccatctcttctttggtacctaaaatattagtg 35670168  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  35670169 taagggtcaatttccttatccaaattggttcctactc-aaagcacaagaaacaatgtcataaaatagatagtatcaaa 35670245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 41339556 - 41339700
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaa-acttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    ||||||||| || ||||||| ||||| ||||||| ||  |||||| ||||||| |||||||| ||| || ||||| |||||| ||||||||||| |||||    
T  41339556 ttacaattcgataaaaaacctaattt-gtcccccatacgcacttcaagcaaaaaacttcaaagcatggaccatcttttctttcgtacctaaaatattagt 41339654  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41339655 gtaagggtcaatttccttatccaaattggttcatactcaaaagcac 41339700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 12773805 - 12773911
Alignment:
Q  207 atctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagata 305  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||| || || |||||||    
T  12773805 atctcttctttggtacctaaaaggttagtgtaagtgtcaattttcttatccaaattggttcatactc-aaagcacaagaaacaatgtcataagatagata 12773903  T
Q  306 gtatcaaa 313  Q
    ||| ||||    
T  12773904 gtaccaaa 12773911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 29271415 - 29271339
Alignment:
Q  210 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaaagcacaagaa 286  Q
    ||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||| |||||||||||||    
T  29271415 tcttctttgatacctaaaatgttggtgtatgggctcaatttccttgtccaaattggttcatact-aaaagcacaagaa 29271339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 23827789 - 23827863
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 309  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  23827789 tgtaagggttaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 23827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 28266551 - 28266628
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaa 312  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| || |||||||| | ||||||    
T  28266551 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcaccagaaacaatgtcataaaatagacaatatcaa 28266628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 28266408 - 28266470
Alignment:
Q  92 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaa 153  Q
    |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||||    
T  28266408 aattaaaattcttaaaataaatatccttcaaaaatttcttctaaagttacaatttaattaaaa 28266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 11387746 - 11387707
Alignment:
Q  237 taagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  11387746 taagggttaattttcttatccaaattggttcatactcaaa 11387707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 27976402 - 27976430
Alignment:
Q  204 atcatctcttctttggtacctaaaatgtt 232  Q
    |||||||||||||||||||||||||||||    
T  27976402 atcatctcttctttggtacctaaaatgtt 27976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 28062930 - 28062958
Alignment:
Q  204 atcatctcttctttggtacctaaaatgtt 232  Q
    |||||||||||||||||||||||||||||    
T  28062930 atcatctcttctttggtacctaaaatgtt 28062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 339056 - 338837
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  339056 aattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccccgtaagcacttcaagcaaaaac 338958  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  338957 ttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 338859  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  338858 ccacaaaatagatagtatcaaa 338837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 43406625 - 43406844
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||  |||||| |||||||||    
T  43406625 aattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccctgtacgcacttcaagcaaaaac 43406723  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43406724 ttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatg 43406822  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  43406823 ccacaaaatagatagtatcaaa 43406844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 109 - 313
Target Start/End: Original strand, 37666454 - 37666656
Alignment:
Q  109 taatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| || |||| ||||||||||    
T  37666454 taatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaa-ctacaaagcatagatcat 37666552  T
Q  209 ctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37666553 ctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgccacaaaatagatagta 37666651  T
Q  309 tcaaa 313  Q
    |||||    
T  37666652 tcaaa 37666656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 35761287 - 35761508
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||    
T  35761287 aattaaaactcttaaactaatatccttaaaaaatttatactaaagttacaattcaatcaaaaatccaatttcgtcccccgtacgcacttcaagcaaaaac 35761386  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaat 290  Q
    |||||| ||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||    
T  35761387 ttcaaagcatagacaatatcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaaccat 35761485  T
Q  291 gccacaaaatagatagtatcaaa 313  Q
    |||| |||||||||  |||||||    
T  35761486 gccataaaatagatgatatcaaa 35761508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 141 - 313
Target Start/End: Original strand, 18472249 - 18472419
Alignment:
Q  141 aattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaag 240  Q
    ||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||    
T  18472249 aattcgatcaaaaacccaattt-gtcccccgtacacacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatattagtgtaag 18472347  T
Q  241 ggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||| ||||||||||||||||||||||| ||||||| | ||||||| || ||||||||||||||||||    
T  18472348 ggtcaattttcttatccaaattggttcatactc-aaagcaccaaaacaatgtcataaaatagatagtatcaaa 18472419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 6836799 - 6836624
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    |||||||||||| |||||||||||||  |||||| |||  |||||| |||||| ||  |||| |||| | |||  |||||||||||||||||||||||||    
T  6836799 ttacaattcaat-aaaaacccaatttgttccccccgtacgcacttcaagcaaacacaccaaagcatacaccattccttctttggtacctaaaatgttagt 6836701  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  6836700 gtaagggtcaatttccttatccaaattggttcatact-taaagcacaagaacaatgccacaaaatagatagtatcaaa 6836624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 8422412 - 8422285
Alignment:
Q  186 aaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag- 284  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||     
T  8422412 aaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcaccaga 8422314  T
Q  285 aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||| || |||||||||| |||||||    
T  8422313 aacaatgtcataaaatagataatatcaaa 8422285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 24276192 - 24276115
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||    
T  24276192 tgtaagggtcaatttctttatccaaattggttcatactc-aaagtacaagaacaatgccacaaagtagatagcatcaaa 24276115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 24055667 - 24055736
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagata 305  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  24055667 tgtaggggtcaatttccttatccaaattggttgatactc-aaagcacaagaacaatgccacaaagtagata 24055736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 19198203 - 19198280
Alignment:
Q  238 aagggtcaatttccttatccaaattggttcatactcaaaagcacaag---aacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||   ||||||| || ||||||||||||||||||    
T  19198203 aagggtcaatttccttatccaaattggttcatactc-aaagcacaagataaacaatgtcataaaatagatagtatcaaa 19198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 25647880 - 25647809
Alignment:
Q  92 aattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 162  Q
    |||||||| ||||||||||| |||||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  25647880 aattaaaattcttaaattaaatatccttcaaaaatctcttctaaagttgcaattaaatcaaaaacccaattt 25647809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 33007051 - 33007129
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| || |||||||||| |||||||    
T  33007051 tgtaagggtcaatttccttatccaaattgattcatactc-aaagcaccagaaacaatgtcataaaatagataatatcaaa 33007129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 33009198 - 33009123
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatc 310  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||| || ||| |||||||||||    
T  33009198 tgtaagggtcaattttcttatccaaattggttcatgctc-aaagcacaagaaacaatgtcataaagtagatagtatc 33009123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 16075527 - 16075468
Alignment:
Q  218 ggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaa 276  Q
    ||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||    
T  16075527 ggtacctaaaatgttggtgtaaaggctcaatttccttatccaagttggttcatactcaaa 16075468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 16111177 - 16111136
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  16111177 tgtaagggtcaattttcttatccaaattggttcatactcaaa 16111136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 19198065 - 19198137
Alignment:
Q  95 taaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccc 169  Q
    ||||| || |||| ||||||||||| |||||| || ||||| |||||||||||| |||||||||||||| |||||    
T  19198065 taaaattcctaaactaatatccttc-aaaattacttctaaaattacaattcaat-aaaaacccaatttcatcccc 19198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 381 - 161
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  381 aattaaaactcttaaactaatatccttcaagagtttctactaaagttaaaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaac 282  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatg 291  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  281 ttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattgattcatactc-aaagcacaagaacaatg 183  T
Q  292 ccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||    
T  182 ccacaaaatagatagtatcaaa 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 313
Target Start/End: Complemental strand, 40459894 - 40459680
Alignment:
Q  97 aaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaa 196  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||    
T  40459894 aaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaatttcgtcccctgtacgcacttcaagcaaaaacttcaa 40459796  T
Q  197 aacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccaca 296  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40459795 agcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgccaca 40459697  T
Q  297 aaatagatagtatcaaa 313  Q
    |||||||||||||||||    
T  40459696 aaatagatagtatcaaa 40459680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 28968494 - 28968716
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa-tttcgtcccccgtatacacttccagcaaaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||| ||||||||    
T  28968494 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaatccaaattttgtcccccgtatgcacttcaagcaaaaa 28968593  T
Q  191 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaa 289  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  28968594 cttcaaagcatagaccatcttttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttgatactc-aaagcacaagaaacaa 28968692  T
Q  290 tgccacaaaatagatagtatcaaa 313  Q
    |  || |||||||||| |||||||    
T  28968693 tctcataaaatagataatatcaaa 28968716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 275
Target Start/End: Complemental strand, 70247 - 70066
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaac 191  Q
    |||||||| ||||||| ||||||| ||||||| || || ||||| |||||||||||| |||||| |||||||||||||||||  |||||| |||||||||    
T  70247 aattaaaattcttaaactaatatcattcaaaa-ttacttctaaaattacaattcaat-aaaaactcaatttcgtcccccgtacgcacttcaagcaaaaac 70150  T
Q  192 ttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaa 275  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  70149 ttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaaggatcaatttccttatccaaattggttcatactcaa 70066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 313
Target Start/End: Complemental strand, 55163082 - 55162920
Alignment:
Q  150 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 249  Q
    ||||||||||||| || | ||||| ||||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  55163082 aaaaacccaattt-gttcgccgtacacacttcaagtaaaaacttcaaagcatagaccatctcttctttggtgcctaaaatgttagtgtaagggtcaattt 55162984  T
Q  250 ccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||| ||||||| || ||||||| || |||||||||| |||||||    
T  55162983 ccttatccaaattggttcatactc-aaagcaccagaaacaatgtcataaaatagataatatcaaa 55162920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 49499950 - 49499822
Alignment:
Q  147 atcaaaaacccaatttcgtcccccgtatacacttccagc-aaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtca 245  Q
    ||||||||| |||||| ||||||||||  |||||| ||| |||||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||    
T  49499950 atcaaaaactcaattt-gtcccccgtacgcacttcaagcgaaaaacttcaaagcatagaccatctcttctttagcacctaaaatgttagtgtaagggtca 49499852  T
Q  246 atttccttatccaaattggttcatactcaa 275  Q
    ||||||||||||||||| ||||||||||||    
T  49499851 atttccttatccaaattagttcatactcaa 49499822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 310
Target Start/End: Original strand, 2761356 - 2761565
Alignment:
Q  96 aaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttca 195  Q
    |||| ||||||| || |||||||||||| || || ||||  ||| |||||||| |||||||||||||||||| | |||  | |||| |||||||||  ||    
T  2761356 aaaattcttaaactactatccttcaaaa-ttacttctaatattaaaattcaat-aaaaacccaatttcgtcctc-gtacgcgcttcaagcaaaaacacca 2761452  T
Q  196 aaacatagatcatctcttctttggtacctaaaatgttagtgt--aagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgcc 293  Q
    || |||| | ||| ||||||||| |||||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||||||   ||||||    
T  2761453 aagcatacaccatgtcttctttgatacctaaaatattagtgtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaag---aatgcc 2761548  T
Q  294 acaaaatagatagtatc 310  Q
    | |||||||||||||||    
T  2761549 ataaaatagatagtatc 2761565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 10276855 - 10276781
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 309  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  10276855 tgtaagggtcaatttccttatacaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 10276781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 34828064 - 34828169
Alignment:
Q  132 taaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgt 231  Q
    |||| |||||||||||||||||| |||||||  ||||   ||| | |||| ||||||||| ||||| |||| | ||| |||| |||||||||||||||||    
T  34828064 taaaattacaattcaatcaaaaatccaattttatcccta-tatgcgcttcaagcaaaaacatcaaagcatacaccatgtcttttttggtacctaaaatgt 34828162  T
Q  232 tagtgta 238  Q
    | |||||    
T  34828163 tggtgta 34828169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 276
Target Start/End: Original strand, 22815622 - 22815774
Alignment:
Q  124 atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||  |||||||| ||||||||    
T  22815622 atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaatcatagactatctcttcattggtacc 22815721  T
Q  224 taaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  22815722 taaaatgttaatgtaagggtcaatttcattatccaaattggttcatactcaaa 22815774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 44437031 - 44436867
Alignment:
Q  110 aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatc 209  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||  |||||| ||||||||||||||| |||||| ||||    
T  44437031 aatatccttcaaaa-tttcttctaaagttacaattcaatcaaaaacccaattt-gtcccccatacgcacttcaagcaaaaacttcaaagcatagaccatc 44436934  T
Q  210 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 276  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  44436933 tcttctttggtacctaaaatgttagtgtaagggtcgatttccttatccaaattgattcatactcaaa 44436867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 137 - 313
Target Start/End: Complemental strand, 6150424 - 6150248
Alignment:
Q  137 ttacaattca-atcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 235  Q
    |||||||||| |||||||||| ||||| |||| |||||  |||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  6150424 ttacaattcagatcaaaaacctaattt-gtcctccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagt 6150326  T
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| || |||||||||| |||||||    
T  6150325 gtaagggtcaatttccttatccaaattggttcatactcaaaa-caccagaaacaatgtcataaaatagataatatcaaa 6150248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 92 - 286
Target Start/End: Original strand, 40840782 - 40840975
Alignment:
Q  92 aattaaaactcttaaatt-aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaa 190  Q
    |||||||| ||||||| | |||||||||||||| || ||  | || |||||||||||||||||| |||||||   ||||||||  |||||| ||||||||    
T  40840782 aattaaaattcttaaaatgaatatccttcaaaa-ttacttttcaaattacaattcaatcaaaaatccaatttgtccccccgtacgcacttcaagcaaaaa 40840880  T
Q  191 cttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaa 286  Q
    ||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  40840881 ctttaaagcatagaccatctcttctttggtacataaaatgttagtgtaagggtcaatttccttatccaaattagttcatactc-aaagcacaagaa 40840975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 41957762 - 41957935
Alignment:
Q  137 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 236  Q
    ||||||||| |||||||| |||||||  |||||| ||  |||| | ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  41957762 ttacaattcgatcaaaaatccaattta-tcccccatacgcactacaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtg 41957860  T
Q  237 taagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |  ||||||| || ||||||||||||||||||    
T  41957861 taagggtcaatttccttatccaaattggttcatactc-aaagca-agaaacaatgtcataaaatagatagtatcaaa 41957935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 35840955 - 35840879
Alignment:
Q  236 gtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtatcaaa 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35840955 gtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaatgccacaaaatagatagtatcaaa 35840879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 12659338 - 12659412
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  12659338 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 12659412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 35841096 - 35841029
Alignment:
Q  96 aaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 162  Q
    |||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  35841096 aaaattcttaaattaattatccttcaaaattttcttctagagttacaattcaatcaaaaacccaattt 35841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 10251046 - 10250975
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatag 306  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||   |||||||||||    
T  10251046 tgtaagagtcaatttccttatccaaattggttcatact-aaaagcacaagaaacaatgctctaaaatagatag 10250975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 22640699 - 22640735
Alignment:
Q  95 taaaactcttaaattaatatccttcaaaaatttctac 131  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22640699 taaaactcttaaactaatatccttcaaaaatttctac 22640735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 21231121 - 21231149
Alignment:
Q  204 atcatctcttctttggtacctaaaatgtt 232  Q
    |||||||||||||||||||||||||||||    
T  21231121 atcatctcttctttggtacctaaaatgtt 21231149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 110 - 313
Target Start/End: Original strand, 32624 - 32822
Alignment:
Q  110 aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatc 209  Q
    |||||||||||||| || |  ||||| |||||||||||| ||||| ||||||| ||||||  ||  |||||| |  |||||||||||| |||||| ||||    
T  32624 aatatccttcaaaa-ttacatctaaaattacaattcaattaaaaatccaattt-gtcccctatacgcacttcaacaaaaaacttcaaagcatagaccatc 32721  T
Q  210 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaagaacaatgccacaaaatagatagtat 309  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  32722 tc--ctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaacaaagccacaaaatagatagtat 32818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 1077 - 958
Alignment:
Q  150 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 249  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||||| ||| || ||||||||||||||||| |||||| |||||||||||||||||||    
T  1077 aaaaacccaattt-gtcccccgtacacacttcaagaaaaaacttcaaagcatggaccatctcttctttggtacttaaaatattagtgtaagggtcaattt 979  T
Q  250 ccttatccaaattggttcata 270  Q
    |||||||||||||||||||||    
T  978 ccttatccaaattggttcata 958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 2122 - 2196
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  2122 tgtaagggtcaatttccttatccaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 2196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 240908 - 240983
Alignment:
Q  92 aattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccc 169  Q
    |||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||||||||||||||||||    
T  240908 aattaaaattcttaaattaatatccttc-aaaattacttctaaaattacaattcaat-aaaaacccaatttcgtcccc 240983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 242428 - 242496
Alignment:
Q  218 ggtacctaaaatgttagtgtaa-gggtcaatttccttatccaaattggttcatactcaaaagcacaagaa 286  Q
    ||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||| ||||||||||||    
T  242428 ggtacctaaaatgttggtgtaaagggtcaatttccttgttcaaattggttcatactc-aaagcacaagaa 242496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 356362 - 356436
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcacaag-aacaatgccacaaaatagatagtat 309  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||   ||||||||||||||    
T  356362 tgtaagggtcaatttccttattcaaattggttcatactc-aaagcacaagaaacaatgctctaaaatagatagtat 356436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 11504 - 11430
Alignment:
Q  235 tgtaagggtcaatttccttatccaaattggttcatactcaaaagcac-aagaacaatgccacaaaatagatagtat 309  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||   ||||||||||||||    
T  11504 tgtaaggatcaatttccttatccaaattggttcatactc-aaagcacaaaaaacaatgctctaaaatagatagtat 11430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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