View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_28 (Length: 311)
Name: NF0553_low_28
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 49751435 - 49751723
Alignment:
| Q |
8 |
ccaacaatataaacttgagaaacctgaaaagtccttgatctcatcatctacaagcttcccagcaatgaaaacagtgttaacaggtaaaccaggtccaaac |
107 |
Q |
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| T |
49751435 |
ccaacaatataaacttgagaaacctgaaaagtccttgatctcatcatctacaagcttcccagcaatgaaaacagtgttaacaggtaaaccaggtccaaac |
49751534 |
T |
|
| Q |
108 |
gcaggttcctttacatacttatgaaacttccactctcctctttcaacaatcccaaaccctaactctccaaaaacctaatcacaaaacaattaaacaccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49751535 |
gcaggttcctttacatacttatgaaacttccactctcctctttcaacaatcccaaaccctaactctccaaaaacctaatcacaaaacaattaaacaccaa |
49751634 |
T |
|
| Q |
208 |
attcataactactttcagctcaatgattcaaaacaaaccaaaattcaagagcactacctc-tttagagcggaatggatatcgaattcac |
295 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49751635 |
attcataactactttcagctcaataattcaaaacaaaccaaaattcaagagcactacctcttttagagcggaatggatatcgaattcac |
49751723 |
T |
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